Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 2e-15 >seq3 Length=1020397 Score = 98.7 bits (108), Expect = 2e-15 Identities = 265/400 (66%), Gaps = 24/400 (6%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||| |||||||| |||| ||||| ||||| || ||||| || ||||| || || Sbjct 896596 CTACCTCACATGCTTTTCTACGGCCCTCCAGGAACGGGAAAGACCTCGACCATTCTTGCC 896655 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAG---CGCGTGCTCGAGCTGAAC 254117 || || ||| || | |||| |||| | || || || ||||| |||||| Sbjct 896656 CTTGC--GAAGGAACTTTACGGTCCGGAA-ATGATAAAGTCCCGAGTCCTCGAACTGAAC 896712 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC---CAAG 254174 || || |||||||| || | | |||| || || ||| | ||| ||| | || | Sbjct 896713 GCCTCCGACGAACGTGGAATCTCCATCGTGCGAGAGAAGGTGAAGGACTTCGCGCGCATG 896772 Query 254175 A---TGTCGATTTCGTC-----GTTCCAAC-CCGGCT------GTCCGCCTTTCAAGCTC 254219 || ||| | | ||| ||| || ||| |||| || |||||| || Sbjct 896773 CAATTGACGAACCCTCCTGCCGGTTACAAGTCCCGCTACCCATGTCCACCCTTCAAGATC 896832 Query 254220 GTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACG 254279 | ||||| |||||||| |||| ||||||| || || ||| |||||| | ||||| Sbjct 896833 ATCATCCTCGACGAGGCCGACAGCATGACGCAAGATGCCCAGAGCGCCCTGAGACGAACA 896892 Query 254280 ATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATC 254339 ||||||||| || | | || || || |||||| | ||||||||||| | | || Sbjct 896893 ATGGAGACGTACAGCAAGATAACACGATTCTGCCTGATCTGCAACTACGTTACCAGAATT 896952 Query 254340 ATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||| || || || ||| || |||||| |||||| Sbjct 896953 ATCGATCCTCTAGCAAGTCGATGTAGCAAGTTCAGATTCA 896992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073754031888832