Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq39 129 5e-25 seq83 120 2e-22 seq1 114 1e-20 >seq39 Length=338136 Score = 129 bits (142), Expect = 5e-25 Identities = 159/215 (74%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAG 45189 ||| || |||||||||||||| |||||||||||| || | ||| ||| ||| || Sbjct 214888 GTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG---AG 214944 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 || || |||||||| ||||| ||||| |||||||| || | |||||||||||| ||| Sbjct 214945 CTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAAT 215004 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || ||| || | | |||| | ||||||||| | ||| || |||||||| Sbjct 215005 CTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCC 215064 Query 45310 CGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 ||| || ||||| || ||||| |||||| |||||| Sbjct 215065 CGTGAGGGTCTTGACGAAGATCTGCATGATTGCCT 215099 >seq83 Length=135873 Score = 120 bits (132), Expect = 2e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| ||||||||||| || || |||| || Sbjct 25697 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGGCCGTCCTCG 25638 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| |||| ||||||||||| || || | |||||||||||| | Sbjct 25637 AGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 25578 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| || |||||| Sbjct 25577 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 25518 Query 45308 CCCGTCAGAGTCTTCACAAAG 45328 |||||||| |||||||| ||| Sbjct 25517 CCCGTCAGGGTCTTCACGAAG 25497 >seq1 Length=1159409 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||||||||||| || |||||||| || ||| ||| | || || || || Sbjct 850140 GTGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTG 850199 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||| ||||||||||||||||| | ||||||||||||| ||| || Sbjct 850200 CTTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTT 850259 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| ||| ||||| | || || |||||||| || Sbjct 850260 GGACTTGACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 850319 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| || ||||| ||||| ||| Sbjct 850320 GAGAGTCTTGACGAAGATCTGCATCTTG 850347 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| | || || |||| ||||| || || || || || Sbjct 849635 CTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTGCTTACCCGCAAA 849694 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||||||||| || || | |||||||||||| || || |||||| Sbjct 849695 GATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGACTTAACGTT 849754 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||||||||| | ||| |||||||| || || || ||||| || Sbjct 849755 GTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGTGAGGGTCTTGAC 849814 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 849815 GAAGATTTGCAT 849826 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| |||||| ||||||||| |||||||||||| |||| |||| | || ||| Sbjct 849390 ACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCCTCC 849449 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || || ||||| || | || || || || || || | |||||||||||| Sbjct 849450 AATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 849509 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||| | || || |||| || ||||||||| Sbjct 849510 ATCTTGCTCTTGACGTTGTCGATCGTATCCGAAGATTCAACTTCCAATGTGATCGTCTTG 849569 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| || ||||| ||||| Sbjct 849570 CCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||||||||||||| || || |||| || ||||| || |||||||| Sbjct 849864 TCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAG 849923 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| |||||||||||||| || | || ||||||||| ||| ||| ||| || Sbjct 849924 ATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGACTTGACATTG 849983 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| ||| ||||| | |||||| ||||| || || || ||||| || Sbjct 849984 TCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGAC 850042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395070871333879