Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 196 4e-45 seq1 104 2e-17 seq39 95.1 1e-14 >seq3 Length=1020397 Score = 196 bits (216), Expect = 4e-45 Identities = 582/886 (66%), Gaps = 29/886 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||| || || || || ||||| | ||| || | || || Sbjct 108069 ATCTGGCAGATGTACAAGAAGCACGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 108128 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGA-GAGAAATTTTA--TT 57683 || |||||||| || ||| | || | || || ||| ||||| |||| | Sbjct 108129 TCCAAGGATCTTCATGACTGGAGTAACCGATTGAACGA---TGACGAGAAGTTTTTCGTC 108185 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | | || || |||||||| ||||| || || || |||||||| | ||||| Sbjct 108186 TCCCACATCCTTGCCTTCTTCGCCGCGTCCGACGGCATCGTCAACGAGAACCTTGTCGAG 108245 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 |||| ||||| || | | ||||| ||||||| ||||| || || | Sbjct 108246 CGATTCAGCGGTGAAGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 108305 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || | ||| || || ||||| ||||| ||| | ||||| | Sbjct 108306 ATGGAGAACATCCACTCCGAGACGTACTCTCTTCTCATTGATACCTACATCAAGGAGCCC 108365 Query 57864 GACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | | |||| || | || |||||||| || || || || ||| ||| | ||||| Sbjct 108366 GCCCAGAAGACCCAT-CTCTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGGC 108424 Query 57923 AGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 || ||| | || ||||||| | ||| | | | || || || || | || | Sbjct 108425 TGACTGGGCTCTCCAATGGATCGCTGACAAG----AAGTCTACCTTTGCTCAGCGACTCA 108480 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || ||||| ||||| || ||||| ||||| || |||||| | || || ||| Sbjct 108481 TTGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTTGCCTCTATCTTCTGGT 108540 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 ||||||| || || ||||||||||| || || || ||||||| | || || || |||| Sbjct 108541 TGAAGAAGCGTGGTCTGATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCTCGTGACG 108600 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCGAC 58156 |||||||||| ||||| || || ||||| ||| ||||||| | || || || | Sbjct 108601 AGGGTCTCCACACTGACTTCGCCTGCCTGCTGTTCTCTCAC---CTGAAGAACCGCCCAG 108657 Query 58157 GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 || ||| | ||| | | || |||||||| || || | || || || ||||| | | Sbjct 108658 GCAAGGACCTCATTGAGAAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCTTGA 108717 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 | || || | || ||| | ||||| |||||| | |||||| ||||||| | Sbjct 108718 CTGAGGCTTTGCCCTGCGCCCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATCG 108777 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAA 58333 |||| || || ||| | || ||| ||| || | |||| ||| ||| | | Sbjct 108778 AGTTCGTCGCTGACCGTCTGTTGGTCGCCCTTGGCAACGAGAAGGTC--TACCGTTCCAG 108835 Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaa 58393 || || || || || ||| | ||||| |||| |||||||| ||||| ||||| || Sbjct 108836 CAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAA 108895 Query 58394 aaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439 ||| | || || ||||| ||| || ||| | ||| |||| Sbjct 108896 GCGAGTCGGTGACTACCAAAAGGCCGGTGTCATGGCCAGTACCAAG 108941 >seq1 Length=1159409 Score = 104 bits (114), Expect = 2e-17 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || || || || || ||| |||| || || ||||||||| ||| Sbjct 850044 TCGTCAAGACCCTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCGTCCGACACAATCG 849985 Query 31263 AAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | ||||| || ||| | ||||||||||||| | || |||||||| |||||||| Sbjct 849984 ACAATGTCAAGTCAAAGATTCA-GGACAAGGAAGGCATTCCCCCCGACCAACAGCGTCTG 849926 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATAACATTCAAA 31379 || ||||| ||||| || | || ||| | | |||| ||| || |||||||| | Sbjct 849925 ATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTAT--CCGACTACAACATTCAGA 849868 Query 31380 AAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| ||||| || || || ||| | || | || |||| Sbjct 849867 AGGAATCTACTCTCCACCTTGTCCTTCGTCTCCGTGGTGGTA 849826 >seq39 Length=338136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || ||||| || |||||| | || || || Sbjct 215096 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGT 215037 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| | |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 215036 CTTCCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCG 214977 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||||| | || ||||| ||||| ||| | || || Sbjct 214976 ACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGA 214937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761390700080