Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq21 105 1e-17 >seq21 Length=436828 Score = 105 bits (116), Expect = 1e-17 Identities = 119/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 94399 CCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGG 94458 |||||||||||||| || |||||||| |||| |||||| ||||| | ||| || | ||| Sbjct 6478 CCTTCAGCCTCATACTTTTCGTACAAAGCCTCAAACTCGTCGCCGTAGACATCAGCTAGG 6419 Query 94459 CCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCC 94515 ||||||||||||| ||||||||||| | ||| || || |||| || | || | Sbjct 6418 CCAGGGCACTCGTTGGGGCACATCAAAGTCCA---CTCGCCGTTCTTCTCGACACGCTTC 6362 Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 ||||| || || | | ||||| ||| ||||||||| Sbjct 6361 ATGAAAAGGTCGGGAATCCAGAGAGCCAAGAAAAGATC 6324 Score = 87.8 bits (96), Expect = 4e-12 Identities = 183/266 (69%), Gaps = 5/266 (2%) Strand=Plus/Minus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| |||||||||| || || ||| || ||||| || ||||| |||||| Sbjct 6085 CCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTATCGTAGATACCGTCAATG 6026 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACTGTTCCACA 94910 || ||||| | | | | |||||||| || || | || | | ||| | ||||| Sbjct 6025 CTGTCATCCTTCATATCGACGAGGAAGCAGGAAGACAACTGTGCTTGTGGC-GTTCCGGC 5967 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 ||||| || ||||||||||||||||| || || | ||||||| | | || |||| Sbjct 5966 GTTAAAGAGAGTGGGGGAAGCATGGGTGAAGTACTTGTTCGACATCAAGTTGTAGGTTTG 5907 Query 94971 AATGACAGATTTGATGTC-TGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029 ||| || | | || | | || | || ||||| || |||||||| ||||||| || Sbjct 5906 AATAACCTTCTCAACATCGTCACCCCAG-ATACCGACGGCAACACGCATGATCATGTGCT 5848 Query 95030 GAGGGCGCTCAACCAAGATTCTCTTC 95055 | || | ||| | ||| ||||| || Sbjct 5847 GCGGTCTCTCTA-CAATCTTCTCATC 5823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989572601538545