Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 >seq3 Length=1020397 Score = 114 bits (126), Expect = 2e-20 Identities = 368/567 (65%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| || || ||||| || ||| ||||||||||| | | || | |||||||| Sbjct 108634 AACAGCAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 108575 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || || |||||||| || |||||||| || | ||| || || || ||||| | ||| Sbjct 108574 AAGGTAAGACCGGGCATCAGACCACGCTTCTTCAACCAGAAGATAGAGGCAAAGGCACCA 108515 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACCGGC 36324 ||||| || || || || || || |||||||| |||| || || || | | Sbjct 108514 CTGAAGAAGATACCCTCAACGGCAGCGAAGGCAATGAGTCGCTGAGCAAAGGTAGACTTC 108455 Query 36325 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 ||||| ||||| | ||||||| || ||||| | || || || || || Sbjct 108454 -TTGTCAGCGATCCATTGGAGAGCCCAGTCAGCCTTACGGCGGATGCAGGGGATGGTGTC 108396 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444 || || || ||||||| | | || | || || | || |||||||| | ||| Sbjct 108395 AATGGCGTTGAAGAGATGGGTCTTCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGAAG 108336 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 | ||| | || || || ||||| || || || || || |||||||| |||| ||| Sbjct 108335 AGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGC 108276 Query 36505 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 ||||| ||||| ||||| | ||||| || | | || || || || || ||||| Sbjct 108275 CTCGGGGATCTGAACTTCACCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTC 108216 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGT--GTTAG 36621 || || || || || | | || | ||| | || |||| | || | | Sbjct 108215 GGACGCGGCGAAGAAGGCAAGGATGTGGGAGACGAAAAACTTCTCGTCATCGTTCAATCG 108156 Query 36622 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 36681 ||| |||| |||| | ||| || || | ||| | || || | ||||| || || || Sbjct 108155 GTTACTCCAGTCATGAAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGC 108096 Query 36682 CTCTGCCTTTTTATACATATTCCAGAT 36708 ||| ||| || ||||| | |||||| Sbjct 108095 CTCGTGCTTCTTGTACATCTGCCAGAT 108069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165403783160