Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 >seq1 Length=1159409 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || ||||| | ||| ||||| || || ||||| || ||| Sbjct 849369 TGTCCACCACGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCG 849428 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| || || | || |||||||| |||| |||||||||||||| || Sbjct 849429 CTCAGGGTGCGACCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGT 849488 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || || || ||||| ||| || || | | || | || || | | || Sbjct 849489 GGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTATCCGAAGATTCA 849548 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | ||||||||| ||||| || || ||||| || |||||| Sbjct 849549 ACTTCCAATGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATA 849599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058425480800