Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq21 109 7e-19 >seq21 Length=436828 Score = 109 bits (120), Expect = 7e-19 Identities = 313/481 (65%), Gaps = 3/481 (1%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || |||||||| || | || || |||| |||||||| ||||||||||| || || ||| Sbjct 7600 GTGAACTGAATAGGGGCGGCAGCAGCTTGGGTACGTAGGTAGTACATGCCGGTCTTGAGA 7541 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 ||||| |||| || || ||||| || || | ||| | | || || ||| Sbjct 7540 CCGAGCTTCCAGCCAGTGAAGTGCATGCTGGTGATCTTGCCCATGGTGGGCTCTCTCATG 7481 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 ||||| |||| ||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 7480 TGAATGTTCAGTGACTGGGATTGATCAATGAACGCACCACGGTCAGCAGCCATCTGAACA 7421 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 | || || || | |||||||||| || || || | ||| || || |||| | Sbjct 7420 ACTGTTTTCTGGGAGATTTCCCAAACCGTCTTGTAGAGCGCCTTGATGTCGGTAGGAATG 7361 Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097 || | | ||||||| || || || || ||||| || | || || || | || | Sbjct 7360 TTAGGAATGTTCTGAACAGAACCGCCTTCGGCAATGATACGGTTCTTCATGCCATCGGAC 7301 Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157 || | | ||| | | |||| || ||| ||||| || || || || ||| Sbjct 7300 CAGAGACCCATATCGACAAGGTCCTTAAGAAGCCAAGGGTTAACGACCTGGAACTCACCA 7241 Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217 | | || | ||||| ||| || || || || || || | |||| || || ||| Sbjct 7240 GCAAGCACACGACGAGAGTAGATGTTCGAAGTGTAAGGCTCGAAACACTCGTTGTTACCC 7181 Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCA 71277 | ||| || | || ||||| |||||||| || ||||| ||||| || | | |||| Sbjct 7180 AGAATCTGGGATGTGCTGGCAGTGGGCATAGGAGCGACCAACAGACTGTTGCGTACACCA 7121 Query 71278 T 71278 | Sbjct 7120 T 7120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131658073240