Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq58 104 4e-18 seq12 104 4e-18 >seq58 Length=209939 Score = 104 bits (114), Expect = 4e-18 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 |||| | || |||| ||||||| || | ||| |||||| ||||||| || || || Sbjct 1999 CTCTACAGTGATCTACGAAGAGACGCGAGGTGTCTTGAAGTCCTTCCTCGAGGGTGTCAT 1940 Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATAT 16647 || |||||| || ||| ||||||||||| || || ||||| ||||| || | || | Sbjct 1939 CCGTGATGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACGTCGCTTGACGT 1880 Query 16648 CGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| || ||||| || |||||||| | | || ||||| || ||||| Sbjct 1879 CGTCTACGCCTTGAAGCGACAAGGCCGCACCCTCTACGGTTTCGGTGGTTAA 1828 Score = 102 bits (112), Expect = 1e-17 Identities = 84/100 (84%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||| ||||| |||| Sbjct 2155 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACTAAGCCCGCTA 2097 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||| ||||| || ||||||||||| ||||||||| |||| Sbjct 2096 TCCGACGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATCTC 2057 >seq12 Length=566664 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 400033 GCCAAGCGCCACCGTAAGAT-TCTTCGTGACAACATCCAGGGCATCACCAAGCCCGCTAT 399975 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| |||||||||||||| ||||||||| |||| Sbjct 399974 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 399936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074378038007