Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 132 6e-26 >seq3 Length=1020397 Score = 132 bits (146), Expect = 6e-26 Identities = 372/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || ||||| || ||| ||||||||||| | | || || |||||||| Sbjct 108634 AACAGCAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 108575 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || |||||||| || |||||||| || | ||| || || || || || | ||| Sbjct 108574 AAGGTAAGACCGGGCATCAGACCACGCTTCTTCAACCAGAAGATAGAGGCAAAGGCACCA 108515 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA----TAACCGGC 33470 |||||||| || || || ||||| |||||||| |||| || || || | | Sbjct 108514 CTGAAGAAGATACCCTCAACGGCAGCGAAGGCAATGAGTCGCTGAGCAAAGGTAGACTTC 108455 Query 33471 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 ||||| ||||| | ||||||| || ||||| | || || || || || Sbjct 108454 -TTGTCAGCGATCCATTGGAGAGCCCAGTCAGCCTTACGGCGGATGCAGGGGATGGTGTC 108396 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 ||||| || ||||||| | | || | || || | || ||||| || | ||| Sbjct 108395 AATGGCGTTGAAGAGATGGGTCTTCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGAAG 108336 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 | ||| | || || || ||||| || || ||||| || |||||||| |||| ||| Sbjct 108335 AGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGC 108276 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 ||||| ||||| ||||| | ||||| || | | || || || || || ||||| Sbjct 108275 CTCGGGGATCTGAACTTCACCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTC 108216 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGT--GTTAG 33767 || || || || || | | || | ||| | || ||||| | || | | Sbjct 108215 GGACGCGGCGAAGAAGGCAAGGATGTGGGAGACGAAAAACTTCTCGTCATCGTTCAATCG 108156 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 ||| |||| |||| | ||| || || | ||| | || || | ||||| || || || Sbjct 108155 GTTACTCCAGTCATGAAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGC 108096 Query 33828 CTCTGCCTTTTTATACATGTTCCAGAT 33854 ||| ||| || ||||| | |||||| Sbjct 108095 CTCGTGCTTCTTGTACATCTGCCAGAT 108069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940199630840