Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 8e-15 seq39 84.2 1e-11 >seq1 Length=1159409 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| || || ||| |||||| || || ||||| || | Sbjct 849372 CCACCACGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTC 849431 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || ||||| || || || || || || ||||| ||||| | ||| Sbjct 849432 AGGGTGCGACCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGTGGG 849491 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| || || ||| || || | || ||||| | ||||||| Sbjct 849492 ATTCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTATCCGAAGATTCAACT 849551 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || || ||||||||||| || ||||| |||||||| Sbjct 849552 TCCAATGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 >seq39 Length=338136 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | || | || || ||||||||||| || || ||||| || || Sbjct 214865 CCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 214924 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || ||||| || || | || || || |||| |||| Sbjct 214925 AGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGG 214984 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| || ||| ||||| | || ||| || | || || Sbjct 214985 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCCACC 215044 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || ||||| || ||||| | ||| || ||||| ||||||||| || Sbjct 215045 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATT 215095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943530130069