Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 123 3e-23 >seq3 Length=1020397 Score = 123 bits (136), Expect = 3e-23 Identities = 370/567 (65%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || ||||| || ||| ||||||||||| | | || | |||||||| Sbjct 108634 AACAGCAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 108575 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || |||||||| || |||||||| || | ||| || || || ||||| | ||| Sbjct 108574 AAGGTAAGACCGGGCATCAGACCACGCTTCTTCAACCAGAAGATAGAGGCAAAGGCACCA 108515 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACCGGC 32827 ||||| || || || || || || |||||||| |||| || || || | | Sbjct 108514 CTGAAGAAGATACCCTCAACGGCAGCGAAGGCAATGAGTCGCTGAGCAAAGGTAGACTTC 108455 Query 32828 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 ||||| ||||| | ||||||| || ||||| | || || || || || Sbjct 108454 -TTGTCAGCGATCCATTGGAGAGCCCAGTCAGCCTTACGGCGGATGCAGGGGATGGTGTC 108396 Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 32947 || || || ||||||| | | || | || || | || |||||||| | ||| Sbjct 108395 AATGGCGTTGAAGAGATGGGTCTTCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGAAG 108336 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 | ||| | || || || ||||| || || || || || ||||||||||||| ||| Sbjct 108335 AGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGC 108276 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 ||||| ||||| ||||| | ||||| || | | || || || || || ||||| Sbjct 108275 CTCGGGGATCTGAACTTCACCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTC 108216 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGT--GTTAG 33124 || || || || || | | || | ||| | || ||||| | || | | Sbjct 108215 GGACGCGGCGAAGAAGGCAAGGATGTGGGAGACGAAAAACTTCTCGTCATCGTTCAATCG 108156 Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 ||| |||| |||| | ||| || || | ||| | || || | ||||| || || || Sbjct 108155 GTTACTCCAGTCATGAAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGC 108096 Query 33185 CTCTGCCTTTTTATACATATTCCAGAT 33211 ||| ||| || ||||| | |||||| Sbjct 108095 CTCGTGCTTCTTGTACATCTGCCAGAT 108069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624879560400