Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq83 89.7 4e-13 >seq1 Length=1159409 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | |||||||| | ||||| |||| ||||||||||| Sbjct 849826 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACGATCACCCTCGAGGTGGAGTCGTCG 849767 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || ||||||||| Sbjct 849766 GACACCATCGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAA 849707 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||| || || || | || || | || ||| | |||| ||||| Sbjct 849706 CAGCGACTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGAACTCTCAGCGACTACAAC 849647 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || Sbjct 849646 ATTCAGAAGGAGTCTACCCTCCA 849624 Score = 100 bits (110), Expect = 2e-16 Identities = 146/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 25003 AAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACA 25062 ||| | | || ||||| | ||||| || |||| || |||| || |||||||| |||| Sbjct 850050 AAACAGTCGTCAAGACCCTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCGTCCGACA 849991 Query 25063 CTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAAC 25119 | ||||| || || ||| |||| | ||| ||||| ||||| ||||| || ||||||| Sbjct 849990 CAATCGA--CAATGTCAAGTCAAAGATTCAG-GACAAGGAAGGCATTCCCCCCGACCAAC 849934 Query 25120 AGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATA 25179 |||| | || || |||||||| ||| | || || | || || | ||| ||||| | Sbjct 849933 AGCGTCTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTATCCGACTACAACA 849874 Query 25180 TTCAAAAAGAATCCACGCTACA 25201 |||| || ||||| || || || Sbjct 849873 TTCAGAAGGAATCTACTCTCCA 849852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || || ||||||| | || || ||||| || Sbjct 850343 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 850284 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || ||| | || | ||| ||||| || || || || || ||| Sbjct 850283 GACACTATTGA--CAATGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATCCCTCCCGAC 850227 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||| || || || || | || |||| |||||| || |||||| Sbjct 850226 CAACAGCGATTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCGGATTAC 850167 Query 25176 AATATTCAAAAAGA 25189 || || ||||| || Sbjct 850166 AACATCCAAAAGGA 850153 >seq83 Length=135873 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| |||| || || ||||||| |||| |||||||| || ||||| ||| Sbjct 25498 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATC 25557 Query 25068 GAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 || || || ||| | || | ||| ||||| || || ||||| || ||||||||||| Sbjct 25558 GA--CAATGTCAAGTCCAAGATTCAG-GACAAGGAGGGAATTCCCCCGGACCAACAGCGT 25614 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || || |||||||| ||| | || || | || || | || ||||| || || Sbjct 25615 CTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGAACGCTCTCTGACTACAACATCCAG 25674 Query 25185 AAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || | ||||| Sbjct 25675 AAGGAGTCCACTCTCCACCTGGTGCT 25700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323252214685