Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq39 105 6e-18 seq83 100 2e-16 >seq1 Length=1159409 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || ||| | || || || || |||||||||| || || || Sbjct 850346 AAGATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCC 850287 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| || | ||| || |||| || ||||| |||||||||||||| || ||||| Sbjct 850286 TCCGACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGAC 850227 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| || | || || || || || ||| | |||||| |||||| | || |||||| Sbjct 850226 CAACAGCGATTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCGGATTAC 850167 Query 22396 AACATTCAAAAAGA 22409 ||||| ||||| || Sbjct 850166 AACATCCAAAAGGA 850153 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | |||||||| ||| |||| || || ||||| | | Sbjct 849826 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACGATCACCCTCGAGGTGGAGTCGTCG 849767 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || ||||||||||||||||| || || || ||| Sbjct 849766 GACACCATCGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAA 849707 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| || || ||| | ||||| ||| || || ||| |||||| Sbjct 849706 CAGCGACTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGAACTCTCAGCGACTACAAC 849647 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || | ||| | ||| | || || ||| Sbjct 849646 ATTCAGAAGGAGTCTACCCTCCACCTTGTTCTTCGACTTCGTGGTGGT 849599 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || ||| |||| | ||||| ||| | | Sbjct 849598 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACGATCACATTGGAAGTTGAATCTTCG 849539 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| || || || ||||||||||| || ||||| ||||| Sbjct 849538 GATACGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 849479 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || || || || || || |||||| |||||| | ||| |||||| Sbjct 849478 CAACGTCTTATCTTCGCTGGTAAGCAATTGGAGGATGGTCGCACCCTGAGCGACTACAAC 849419 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 849418 ATCCAGAAGGAGTCCAC 849402 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || | || || || || || | |||| || | ||| || |||| | Sbjct 850030 ACCGGAAAGACCATTACCCTCGAGGTCGAGTCGTCCGACACAATCGACAATGTCAAGTCA 849971 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||| || ||||| ||||| ||||| ||||| || || |||||||| Sbjct 849970 AAGATTCAGGACAAGGAAGGCATTCCCCCCGACCAACAGCGTCTGATCTTCGCCGGCAAG 849911 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | ||||| ||| ||| | ||||| ||||||||||| || ||||| || Sbjct 849910 CAACTTGAGGACGGCCGAACCCTATCCGACTACAACATTCAGAAGGAATCTAC 849858 >seq39 Length=338136 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | || Sbjct 215091 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 215032 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||| || || ||||| || Sbjct 215031 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 214972 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | |||||| ||| ||| ||||||| |||||| Sbjct 214971 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAAC 214912 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 214911 ATCCAGAAGGA 214901 >seq83 Length=135873 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || ||||| | |||| ||| | ||| || |||| Sbjct 25513 ACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGTCC 25572 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || || ||||| ||||| || || |||||||| Sbjct 25573 AAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAACAGCGTCTGATCTTCGCCGGCAAG 25632 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | ||||| ||| || |||| || |||||||| || || || ||||| Sbjct 25633 CAACTCGAGGACGGCCGAACGCTCTCTGACTACAACATCCAGAAGGAGTCCAC 25685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723401223935