Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq21 102 2e-16 seq33 91.5 3e-13 seq166 86.0 1e-11 seq78 86.0 1e-11 seq66 86.0 1e-11 seq3 86.0 1e-11 >seq21 Length=436828 Score = 102 bits (112), Expect = 2e-16 Identities = 176/253 (70%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 293122 TGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCC 293181 ||||| | || |||||||| |||||||| | | || ||||| ||| ||||| ||| Sbjct 7459 TGATCAATGAACGCACCACGGTCAGCAGCCATCTGAACAACTGTTTTCTGGGAGATTTCC 7400 Query 293182 CACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGAC 293241 || |||||||| | ||||||| || | | ||||| | || ||||| | ||| Sbjct 7399 CAAACCGTCTTGTAGAGCGCCTTGATGTCGGTAGGAATGTTAGGAATGTTCTGAACAGAA 7340 Query 293242 CCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAGCAATGAG 293300 || || | |||||| || |||||||||| |||||||| || |||| | | | || Sbjct 7339 CCGCCTTCGGCAATGATACGGTTCTTCATGCCATCGGACCAGAGACCCAT-ATCGACAAG 7281 Query 293301 CTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTA 293360 || | ||| ||| ||| || || ||||||||||||| || ||||| ||| Sbjct 7280 GTCCTTAAGAAGCCAAGGGTTAACGACCTGGAACTCACCAGCAAGCACACGACGAGAGTA 7221 Query 293361 AATGTTCGAAGTG 293373 |||||||||||| Sbjct 7220 GATGTTCGAAGTG 7208 >seq33 Length=358671 Score = 91.5 bits (100), Expect = 3e-13 Identities = 166/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 279329 GAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGG 279388 |||| |||| ||| ||||||||||| || |||| ||||| || || || |||| Sbjct 66350 GAAGAAGAC-GAGGAGGGTGAGGATCTCTGCAACTGCACCTTCTCTCTTGCGTACGGTGC 66408 Query 279389 GAAGATTCTGCTAAACTCTACCC-GCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCA 279447 ||||| ||||| ||| |||| | || || |||||||||| || ||||||||| Sbjct 66409 CAAGATCCTGCTCAACCAGACCCATCTTCGAC-TCAAGCGTGGTCGTCGTTATGGTCTCT 66467 Query 279448 TCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGG 279507 ||||||||| ||| | || ||| ||| | ||||| ||||| |||| ||| | | Sbjct 66468 GCGGTCCCAACGGATCCGGCAAGTCTACTTTGATGCGTGCCATCAACAACGAGCAGGTCG 66527 Query 279508 AAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 | || || || || | || || | ||| || | || ||||||||| | |||||| Sbjct 66528 AGGGTTTCCCCAAGCAAAACGAAGTCAAGACCGTCTTCGTCGAGCACGACTTGGACTCC 66586 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| ||| |||| || | ||||| ||||| || ||||| || || | Sbjct 67737 CCAACTTCGGTCTTGACGCCGAACTTGTTTCCCACTCGCGCATGCGTGGTCTCTCAGGCG 67796 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| ||||| | | || |||| |||||| | || ||| ||||||| Sbjct 67797 GTCAGCGTGTCAAGGTTGTCCTTGCCGCTTGCTC-GTGGCAGCGACCCCACTTGATCGTC 67855 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 | |||||||| ||||||||||| ||||| || ||| ||||||||| Sbjct 67856 TTGGACGAGCCCACCAACTATCTCGACCGTGACTCCCTTGGCGCTCTG 67903 >seq166 Length=27896 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 94 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 35 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 34 CCCGCATCGGGC 23 >seq78 Length=156778 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 27595 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 27654 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 27655 CCCGCATCGGGC 27666 >seq66 Length=184257 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 166565 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 166506 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 166505 CCCGCATCGGGC 166494 >seq3 Length=1020397 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 369161 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 369220 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 369221 CCCGCATCGGGC 369232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027824960926059