Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq39 167 4e-36 seq1 163 5e-35 seq83 154 3e-32 seq3 123 5e-23 seq33 95.1 2e-14 >seq39 Length=338136 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||| ||| || |||||||| || |||||| Sbjct 214865 CCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 214924 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | || || |||||||| || Sbjct 214925 AGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGG 214984 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| ||||| ||||| | || || || Sbjct 214985 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCCACC 215044 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||||||||| |||||||| || Sbjct 215045 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 215094 >seq1 Length=1159409 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || || | |||||||| ||||||||||| || |||||||| || ||| Sbjct 849371 TCCACCACGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCT 849430 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || || ||||| || ||||| || || | ||| || || ||||| Sbjct 849431 CAGGGTGCGACCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGTGG 849490 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || |||||||| || ||||| ||||||| ||||| || || | ||||| || Sbjct 849491 GATTCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTATCCGAAGATTCAAC 849550 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| ||||| || || ||||| | |||||||||||| |||||||| Sbjct 849551 TTCCAATGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 Score = 152 bits (168), Expect = 9e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || || || || ||||| || ||||| Sbjct 849828 CCACCACGGAGACGAAGGACAAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAT 849887 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | ||||||||||| ||| Sbjct 849888 AGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGA 849947 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||||| |||||| ||||| ||||| | || || || Sbjct 849948 ATGCCTTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATTGTGTCGGACGACTCGACC 850007 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||| ||||| ||||| |||||||||||||||| Sbjct 850008 TCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGACGA 850044 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||| ||| ||||||||||| ||||| || Sbjct 850117 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGAC 850176 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || ||||||||||| || Sbjct 850177 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGGG 850236 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| || || ||||| | || || || Sbjct 850237 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCGGAGGACTCGACC 850296 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| ||||||||||| |||||||| Sbjct 850297 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 850343 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || || ||||| || ||| | Sbjct 849600 CCACCACGAAGTCGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTG 849659 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || |||| |||||||| || || Sbjct 849660 AGAGTTCGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGGTCAGGCGGG 849719 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| | ||| ||| ||||||||||| | || || || Sbjct 849720 ATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGACGACTCCACC 849779 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || ||||||||||||||||| || ||||| Sbjct 849780 TCGAGGGTGATCGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 849826 >seq83 Length=135873 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || |||||||| || || ||| Sbjct 25715 CCACCACGGAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 25656 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | |||||||| || ||| Sbjct 25655 AGCGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 25596 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| ||||||||||| | || || || Sbjct 25595 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 25536 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || | ||||||||| || ||||| |||||||| ||||| Sbjct 25535 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 25498 >seq3 Length=1020397 Score = 123 bits (136), Expect = 5e-23 Identities = 269/401 (67%), Gaps = 4/401 (1%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||| ||||| || || || |||||||||||||| |||||| | Sbjct 108929 CATGACACCGGCCTTTTGGTAGTCACCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCACC 108870 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGG--CGCCAAACTGCTTGGGGTAA 10052 |||||| ||| |||||||||||| |||||||| || || | || ||| || Sbjct 108869 GAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGCTGGAACGGTAGAC--CTTCTCGTTG 108812 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || || || || | |||||||| ||||||||||||||||| |||||| || ||| Sbjct 108811 CCAAGGGCGACCAACAGACGGTCAGCGACGAACTCGATGTACTGCTTCATCAAGTTGGAG 108752 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | | | |||||| | || || | ||| ||||| || || | || Sbjct 108751 TTCATGCCGAGAAGGGCGCAGGGCAAAGCCTCAGTCAAGAACTCCTTCTCAATGACAACG 108692 Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232 || || || ||| ||| | | ||| | | ||||| || | || || Sbjct 108691 GCATCGGTGATGATCTTCTCAATGAGGTCCTTGCCTGGGCGGTTCTTCAGGTGAGAGAAC 108632 Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292 || || | || | |||||| |||||||| || ||||| ||||||||| || Sbjct 108631 AGCAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAG 108572 Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAAT 10333 ||||||||||| || || || || || |||||| || Sbjct 108571 GTAAGACCGGGCATCAGACCACGCTTCTTCAACCAGAAGAT 108531 >seq33 Length=358671 Score = 95.1 bits (104), Expect = 2e-14 Identities = 179/257 (70%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAG 225809 |||||| |||| | | | | ||| | |||||| || ||| | || ||| || | | Sbjct 66604 GGTCATCTCCGTGTCTGCGGAGTCCAAGTCGTGCTCGACGAAGACGGTCTTGACTTCGTT 66545 Query 225810 AAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGC 225869 || | |||||| ||||| | ||| | || || ||||| | || ||| ||||| Sbjct 66544 TTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATCAAAGTAGACTTGC 66486 Query 225870 CCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGC-GCGTG 225928 | | |||||||||||| ||| || ||| || || ||||||| || || | | || Sbjct 66485 CGGATCCGTTGGGACCGCAGAGACCATAACGACGACCACGCTTGA-GTCGAAGATGGGTC 66427 Query 225929 GAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCA 225988 ||| || ||||||||| |||| || ||||| ||||| ||| | ||| || |||||| Sbjct 66426 TGGTTGAGCAGGATCTTGGCACCGTACGCAAGAGAGAAGGTGCAGTTGCAGAGATCCTCA 66367 Query 225989 CCCTCCTCGGTCTCCTT 226005 |||||||| |||| ||| Sbjct 66366 CCCTCCTC-GTCTTCTT 66351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921612043268280