Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 329 6e-85 seq21 288 2e-72 >seq3 Length=1020397 Score = 329 bits (364), Expect = 6e-85 Identities = 596/856 (70%), Gaps = 22/856 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||| || ||| |||||| |||||||||||||| || Sbjct 108069 ATCTGGCAGATGTACAAGAAGCACGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 108128 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | |||| ||| || | ||| || |||| ||||||||| || Sbjct 108129 TCCAAGGATCTTCATGACTGG-AGTAACCGATTGAACGATGACGAGAAGTTTTTCGTCTC 108187 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||||||||| || |||||||| ||||| |||||||| | | | Sbjct 108188 CCACATCCTTGCCTTCTTCGCCGCGTCCGACGGCATCGTCAACGAGAACCTTGTCGAGCG 108247 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| || || ||| | ||||| || |||||||||||||||||||| || Sbjct 108248 ATTCAGCGGTGAAGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 108307 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| |||| | || |||| | || |||||| ||| || Sbjct 108308 GGAGAACATCCACTCCGAGACGTACTC---TCTTCTCATTGATACCTACATCAAGGAGCC 108364 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 || | || | | || ||||| ||||| || || || ||||||||| ||||| Sbjct 108365 CGCCCAGAAGACCCATCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGGC 108424 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAG 42711 |||||||| ||| | ||||||| | | || | | || || | || | || | | Sbjct 108425 TGACTGGGCTCTCCAATGGATCG-CTGACAAGAAGTCTACCTTTGCTCAGCGACTCATTG 108483 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 |||| | ||||| ||||| ||||||||| || ||||| ||||| ||||||||| | | Sbjct 108484 CCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTTGCCTCTATCTTCTGGTTGA 108543 Query 42772 AGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || ||| | ||||||||| || |||||||| ||||| |||||| | |||||| Sbjct 108544 AGAAGCGTGGTCT-GATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCTCGTGACGAG 108602 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890 || || || | ||||| |||||||| |||||||| ||||| | | || |||| | Sbjct 108603 GGTCTCCACACTGACTTCGCCTGCCTGCTGTTCTC---TCACCTGAAGAAC-CGCCCAGG 108658 Query 42891 -AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||||| | | | |||||||| || ||||| | || |||||||||||| | || Sbjct 108659 CAAGGACCTCATTGAGAAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCTTGAC 108718 Query 42950 GCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | ||||| |||| ||||||||||| | || | ||| |||||||| | Sbjct 108719 TGAGGCTTTGCCCTGCGCCCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATCGA 108778 Query 43010 GTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGT 43068 || |||||| |||| ||| | || | ||| || | ||||| | Sbjct 108779 GTTCGTCGCTGACCGTCTGTTGGTCGCCCTTGGCAACGAGAAG-GTCTACCGTTCCAGCA 108837 Query 43069 GCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGC 43128 |||||||||||| |||||||||||||| | | |||||||||||||| |||||||||| Sbjct 108838 ACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGC 108897 Query 43129 GCGTCGCCGACTACCA 43144 | |||| |||||||| Sbjct 108898 GAGTCGGTGACTACCA 108913 >seq21 Length=436828 Score = 288 bits (318), Expect = 2e-72 Identities = 893/1362 (66%), Gaps = 45/1362 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | ||||| || || ||||| ||| || || Sbjct 7262 GTTAACGACCTGGAACTCACCAGCAAGCACACGACGAGAGTAGATGTTCGAAGTGTAAGG 7203 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| | ||| |||| ||||| ||||| | ||||| ||||| ||||| || | || Sbjct 7202 CTCGAAACACTCGTTGTTACCCAGAATCTGGGATGTGCTGGCAGTGGGCATAGGAGCGAC 7143 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || ||||||||| | || || | | || ||| | |||| | |||| ||||| Sbjct 7142 CAACAGACTGTTGCGTACACCATTCTGCTTGATCTGTTCCTTGAGGCTGGTCCAATCCCA 7083 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | || || | || ||| ||||||||| |||| || | || | | Sbjct 7082 AA-----GATCGGACGGCG----TGACATTCCACATGTCGTACTGAAGAATACCTTGGGA 7032 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 ||| ||| |||||||||||| | ||||| ||| || || ||| | || | | Sbjct 7031 GACAGGGGAGCCCTCGTAGGTGGAGTAGGTACCCTCAACCTTGGCAATCTCCATGGAGGC 6972 Query 244390 -GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-G 244447 ||| ||| | | | ||||||||||||||| || |||||||| | | ||||| | Sbjct 6971 AGTCAAGG-CACCATGGTAGATGGTCTCGAAAATTTGCTTGTTCAGCTGTCTGGCCTCAG 6913 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 || | ||| || |||| || || ||| ||| || || ||||| || || | Sbjct 6912 GCG-ACTCGAAAGGCATGCGCAATGCCAAGAAAGTGTCAGCAAGACCCTGAACACCAAGA 6854 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||| | ||||||| ||||| | || | || |||| || ||||| ||||| | Sbjct 6853 CCAATGGGACGGTGTCGCATGTTGCTGTTGCGAGCCTCCGGG-ACAGGGTAGTAGTTGAC 6795 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 ||||| | |||| ||||| ||| || | | ||||| ||| || | ||| || Sbjct 6794 ATCGATGATTCTGTTCAGGTTACGGACGACAACCTGTACGACATCGTGCAACTTCTGGAA 6735 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 |||||| | | ||||| | | ||| | ||| || || |||| Sbjct 6734 GTCGTAGTTGC------CCTCG----TTATAATCAACG-AAAGACGGC-AGAGCGAGAGA 6687 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 |||| ||||||||| || ||||| || | | ||||| || |||||| ||||| || Sbjct 6686 AGCCAAGTTGCAGACAGCGACCTCATCAGGCGCCGAGTACTCGATAATCTCAGTGCACAG 6627 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| || || || || |||| || || ||| ||| ||||||| ||||| Sbjct 6626 GTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGGTTGCTCTTACGGTTGCAGTGATCCTT 6567 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||| ||||||||||| ||||| ||| |||||| | || | | | ||| || | Sbjct 6566 GTAAAGCATGAAGGGGTTTCCGGTTTCGGTCTGGGCCTCAAGAATGGCATACCACAGCTT 6507 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCT-CTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | ||||||| | || ||| ||| | ||| | ||||| || ||||| |||| Sbjct 6506 CTGCGCCTTGATCTTCTGGCG-GCCGCGACCTTCAGCCTCATACTTTTCGTACAAAGCCT 6448 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 | |||||| ||| |||| || ||||||| |||||| |||||||| | | ||| Sbjct 6447 CAAACTCGTCGCCGTAGACATCAGCTAGGCCAGGGCACTCGTTGGGGCACATCAAAGTCC 6388 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 |||||||| | || ||| | || |||||| |||||||| |||||||| ||| ||| | Sbjct 6387 ACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCCAGAGAGCCAAGAAAA 6328 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | || | || ||| ||| |||||| | || || | || || |||| Sbjct 6327 GATCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAACTCGAAGA 6268 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || |||||| ||||| | ||||| |||| ||| || || | ||||||||| |||| Sbjct 6267 CATCCGAGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGTCTCTTGTTGCCACCCT 6208 Query 245166 GGTCCACCATCCTCTCGAGC-GCG---TTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 ||| || | | || ||| | | ||||||| || || | || || || ||||| Sbjct 6207 GGT----CAACGTATCTAGCAGTGTTATTGAAGACACGAAGCATGGGTACAATTCCGTTC 6152 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGGAC 245278 ||| |||||||| || ||| || | ||| | | | || ||| | || || Sbjct 6151 GAGGTACCGTTGGTTCCAGCGATATAAGAGCCGGTAGCACGGATACGGTGGATGTTG--- 6095 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | || | || || || ||||||||| | ||| ||| |||||| ||| || || Sbjct 6094 AGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTATCGTAGATA 6035 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 || || |||||||| |||||| | || || |||||||| |||| || | ||||| || Sbjct 6034 CCGTCAATGCTGTCATCCTTCATATCGACGAGGAAGCAGGAAGACAACT-GTGCTTGTGG 5976 Query 245399 C-TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 | | | | ||| || ||||||||| || ||||| ||||| Sbjct 5975 CGTTCCGGCGTTAAAGAGAGTGGGGGAAGCATGGGTGAAGTA 5934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944328587988240