Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 143 6e-29 seq83 116 9e-21 seq39 113 1e-19 seq15 102 2e-16 seq3 91.5 3e-13 >seq1 Length=1159409 Score = 143 bits (158), Expect = 6e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 |||||||| ||||| | || || | || | |||| || || ||||| || |||||| Sbjct 849369 TGTCCACCACGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCG 849428 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || ||||| || || || ||||| || || |||||||| ||||| || ||| | | Sbjct 849429 CTCAGGGTGCGACCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGT 849488 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||| || || |||||||| || ||| || ||||| || || | ||| ||||| Sbjct 849489 GGGATTCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATCGTATCCGAAGATTC 849547 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||||||||| || |||| ||||||||||| |||||||| Sbjct 849548 AACTTCCAATGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| ||| || || || | || || || || || || |||||| | Sbjct 849600 CCACCACGAAGTCGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTG 849659 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || || ||||| || |||||||| | ||| Sbjct 849660 AGAGTTCGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGGTCAGGCGGG 849719 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| |||| || ||||| || || | || ||| || || Sbjct 849720 ATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGACGACTCCACC 849779 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| ||||| || ||||||||||| || ||||| Sbjct 849780 TCGAGGGTGATCGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 849826 Score = 114 bits (126), Expect = 3e-20 Identities = 158/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | || ||| || || || || ||||||| Sbjct 849828 CCACCACGGAGACGAAGGACAAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAT 849887 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | ||| || || |||||||||||||||||||| || ||| Sbjct 849888 AGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTG---GTCGGGG 849944 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||| || || | || || || || || | ||| ||| || Sbjct 849945 GGAATGCCTTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATTGTGTCGGACGACTCG 850004 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || ||||| || || ||||| ||||| || |||||||||| Sbjct 850005 ACCTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGACGA 850044 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || || || || | ||||| || |||||||| || || | Sbjct 850113 CATG-CCACCACGGAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTTTGGATGTTGTAAT 850171 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || || || | || || || ||||| |||| |||||||| Sbjct 850172 CCGACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAATCGCTGTTGGTCGG 850231 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || ||||| || || | || || || || |||| ||| || | Sbjct 850232 GAGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCGGAGGACT 850291 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || || |||||||||||||| |||||||| Sbjct 850292 CGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 850343 >seq83 Length=135873 Score = 116 bits (128), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| || ||||| | | Sbjct 25715 CCACCACGGAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 25656 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || ||||| || | ||| || || |||||||||||||||||||| || ||| Sbjct 25655 AGCGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTG---GTCCGGG 25599 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||| || || | || || || || || | ||| || || Sbjct 25598 GGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 25539 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || ||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 25538 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 25498 >seq39 Length=338136 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||||| || || ||||| || ||||||| | Sbjct 214865 CCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 214924 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || |||||||||| ||||| || ||| Sbjct 214925 AGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGG 214984 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || || || || |||| ||| || || || Sbjct 214985 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCCACC 215044 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| ||||| || || || ||||||||||| |||||||| || Sbjct 215045 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 215094 >seq15 Length=521638 Score = 102 bits (112), Expect = 2e-16 Identities = 194/281 (69%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAA-TCTCGAACCGAACTGGCCCTC 325380 |||||||| ||||| ||| ||| |||||| ||| | || |||||||| | || Sbjct 332899 ATATATCGAGCACTAGCGGCATCGGAACCACC-TGCGAGTCGAGAACCGAAATTTCCGCT 332841 Query 325381 CGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGT 325440 || | ||||||| ||| ||| |||||| | | ||| || ||| | ||| || Sbjct 332840 AGGTTCGAGGCAGTTGACGTTGTTGGAGCCGACAAAGTTCTGAGCTAGGCCGATGATAGT 332781 Query 325441 CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAA-CCGCTGA 325499 | |||| |||| |||| |||||||||||||| | ||||||| |||||| |||| Sbjct 332780 CTGCTGCAAAGATACTTCACCATGGTGATAGGCCGTCTGCTCTGAGACGTAACCCGC--- 332724 Query 325500 ACTGTGC---AACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTT 325556 | || | ||||||| ||| |||| || || | ||||||| | ||| || || | Sbjct 332723 -CAGTTCGATAACCTTCTTGTCTTTCGTTAAGTTTCTCTTGAAACAGGCATAGATGACCT 332665 Query 325557 TCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATG 325597 | || ||| |||||| | ||| || ||||| || || ||| Sbjct 332664 TTCGCTGACCAGGTTTTAGACCGTCGACGACGGAAGGGATG 332624 >seq3 Length=1020397 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| || | | ||||| || || ||||| ||||| ||||| ||| | || Sbjct 108742 TCGGCATGAACTCCAACTTGATGAAGCAGTACATCGAGTTCGTCGCTGACCGTCTGTTGG 108801 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272 || || || | ||||| || ||| ||| | || ||||||| ||| ||||| | Sbjct 108802 TCGCCCTTGGCAACGAGAAGGTCTACCGTTCCAGCAACCCCTTCGACTTCATGGAGAACA 108861 Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325 | || |||| || ||||| ||||||||||| ||||| ||| | ||||| ||| Sbjct 108862 TCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGAGTCGGTGACTACCAA 108914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179640812224522