Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 116 8e-21 seq15 102 2e-16 >seq3 Length=1020397 Score = 116 bits (128), Expect = 8e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || |||| | || ||||| ||| | || ||| | || ||| Sbjct 108678 ATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCTTGACTGAGGCTTTGCCCTGCGCC 108737 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| | ||||||||||| | | ||| ||||||||||| ||||| || ||||| | Sbjct 108738 CTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATCGAGTTCGTCGCTGACCGTCTG 108797 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||| ||||| | ||||| || ||| |||| |||||||| | ||| |||||| Sbjct 108798 TTGGTCGCCCTTGGCAACGAGAAGGTCTACCGTTCCAGCAACCCCTTCGACTTCATGGAG 108857 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||| || || || || || ||||||||||| ||||| ||| |||| || ||| Sbjct 108858 AACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGAGTCGGTGACTACCAA 108914 >seq15 Length=521638 Score = 102 bits (112), Expect = 2e-16 Identities = 194/281 (69%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 297443 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAA-TCTCGAACCGAACTGGCCCTC 297501 |||||||| ||||| ||| ||| |||||| ||| | || |||||||| | || Sbjct 332899 ATATATCGAGCACTAGCGGCATCGGAACCACC-TGCGAGTCGAGAACCGAAATTTCCGCT 332841 Query 297502 CGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGT 297561 || | ||||||| ||| ||| |||||| | | ||| || ||| | ||| || Sbjct 332840 AGGTTCGAGGCAGTTGACGTTGTTGGAGCCGACAAAGTTCTGAGCTAGGCCGATGATAGT 332781 Query 297562 CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAA-CCGCTGA 297620 | |||| |||| |||| |||||||||||||| | ||||||| |||||| |||| Sbjct 332780 CTGCTGCAAAGATACTTCACCATGGTGATAGGCCGTCTGCTCTGAGACGTAACCCGC--- 332724 Query 297621 ACTGTGC---AACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTT 297677 | || | ||||||| ||| |||| || || | ||||||| | ||| || || | Sbjct 332723 -CAGTTCGATAACCTTCTTGTCTTTCGTTAAGTTTCTCTTGAAACAGGCATAGATGACCT 332665 Query 297678 TCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATG 297718 | || ||| |||||| | ||| || ||||| || || ||| Sbjct 332664 TTCGCTGACCAGGTTTTAGACCGTCGACGACGGAAGGGATG 332624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102867296545650