Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 125 8e-24 seq39 111 2e-19 >seq1 Length=1159409 Score = 125 bits (138), Expect = 8e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 |||||||||||||| || |||||||| | |||||| || | || || |||||||||||| Sbjct 850147 GTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGCTTACCA 850206 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 42130 ||||| || | |||||| ||||||| || | | |||||||||| ||| | || | || Sbjct 850207 GCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCC-TGAATCTTGGACTT 850265 Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 || | | | |||||| || || || || | |||||||| ||||| || || || Sbjct 850266 GACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGT 850325 Query 42191 CTTTACAAAGATTTGCATTTT 42211 ||| || ||||| ||||| || Sbjct 850326 CTTGACGAAGATCTGCATCTT 850346 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || ||||| || |||| || ||||||||||| || || Sbjct 849635 CTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTGCTTACCCGCAAA 849694 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||| ||||| | || | | |||||||| | || | || | | | ||| Sbjct 849695 GATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGT-CTTGGATCTTCGACTTAACGT 849753 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| ||| ||||| |||| ||||| || || || || || ||||| | Sbjct 849754 TGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGTGAGGGTCTTGA 849813 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 849814 CGAAGATTTGCAT 849826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| || || ||||| || ||| || || | || || Sbjct 849390 ACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCCTCC 849449 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||||||||||| || || || ||||| || | ||| | | |||||||||| | Sbjct 849450 AATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 849509 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || || |||| ||| | | | ||| || ||||| || || | ||||| || || Sbjct 849510 ATCTTGCTCTTGA-CGTTGTCGATCGTATCCGAAGATTCAACTTCCAATGTGATCGTCTT 849568 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| | ||||| || ||||| ||||| Sbjct 849569 GCCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 >seq39 Length=338136 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| || | || || || | || || |||||||| || Sbjct 214895 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCG 214954 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 42130 ||||| || | |||||||||||||| || | || |||||||||| ||| | || | || Sbjct 214955 GCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGACTT 215013 Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 || | | | |||||| || ||||| || | ||||| || |||||||| || || Sbjct 215014 GACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 215073 Query 42191 CTTTACAAAGATTTGCAT 42208 ||| || ||||| ||||| Sbjct 215074 CTTGACGAAGATCTGCAT 215091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543206695646160