Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq83 82.4 8e-11 >seq1 Length=1159409 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || ||||| || ||||||||||| || | | ||| || |||| Sbjct 849842 AAGGACAAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTC 849901 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| ||||||||||| | || || ||||| |||||||| ||||| ||||| || || Sbjct 849902 CTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTC 849961 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| ||| || | ||| || | || || || | || | ||| Sbjct 849962 CTGAATCTTTGACTTGACATTGTCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGT 850021 Query 64411 CTTGCCGGTCAAAGTTTTTACGA 64433 ||| ||||| | || || |||| Sbjct 850022 CTTTCCGGTGAGGGTCTTGACGA 850044 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || ||||| ||||||||||| | | ||||| | || ||||||||||| || || || Sbjct 850153 TCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAA 850212 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||| ||||||||||| || || || || || || || || ||| ||| Sbjct 850213 ATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATTG 850272 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || || || | ||| | ||||||||| || | ||| || ||| Sbjct 850273 TCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACG 850332 Query 64433 AAAATTTGCATTTT 64446 || || ||||| || Sbjct 850333 AAGATCTGCATCTT 850346 >seq83 Length=135873 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | || || || |||| Sbjct 25700 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGGCCGTCC 25641 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||||||||| | || || ||||| ||||| || |||||||| || || || Sbjct 25640 TCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCC 25581 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | ||||| || | || | |||| Sbjct 25580 TGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 25521 Query 64412 TTGCCGGTCAAAGTTTTTACGAA 64434 ||||| |||| || || ||||| Sbjct 25520 TTGCCCGTCAGGGTCTTCACGAA 25498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639185241560