Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq21 196 5e-45 >seq21 Length=436828 Score = 196 bits (216), Expect = 5e-45 Identities = 602/921 (65%), Gaps = 10/921 (1%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| ||||| || ||||| || ||| | |||||| | |||| Sbjct 5769 AACTACCAATACTTTGGTTTCAAGACCTTGGAGCGATCTTACTTGCTCAAGCTTGATGAG 5828 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||| ||||||| || || | ||||| || ||| |||| || || || Sbjct 5829 AAGATTGTAGAGAGACCGCAGCACATGATCATGCGTGTTGCCGTCGGTATCTGGGGTGAC 5888 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | ||| ||| | | | | || ||| | ||||| | ||| || Sbjct 5889 GATGTTGAGAAGGTTATTCAAACCTACAACTTGATGTCGAACAAGTACTTCACCCATGCT 5948 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 |||| || || || ||||| || || || ||||| ||||||| || ||||| | Sbjct 5949 TCCCCCACTCTCTTTAACGCCGGAACGCCACAAGCACAGTTGTCTTCCTGCTTCCTCGTC 6008 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | |||| ||| ||| ||| || | ||| | ||||||| |||||| | ||| Sbjct 6009 GATATGAAGGATGACAGCATTGACGGTATCTACGATACCCTCAAGACCTGTGCCATGATC 6068 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCT 94072 || || || || || || || ||| ||||| |||| ||||| | || || | Sbjct 6069 TCCAAGATGGCTGGTGGTATTGGTCTCAACATCCAC--CGTATCCGTGCTACCGGCTCTT 6126 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 | ||| || ||||| || ||||| ||||| | || || ||||| || |||||||| | Sbjct 6127 ATATCGCTGGAACCAACGGTACCTCGAACGGAATTGTACCCATGCTTCGTGTCTTCAATA 6186 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || | ||||| ||||||||||| | ||| ||| | ||||| |||| | Sbjct 6187 ACACTGCTAGATACGTTGACCAGGGTGGCAACAAGAGACCTGGTGCCTTCGCCATCTACC 6246 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 | ||||| |||||| |||| || | ||| ||||||| || |||||||||||||| | Sbjct 6247 TTGAGCCTTGGCACTCGGATGTCTTCGAGTTCCTCGACCTTCGCAAGAACCACGGCAAGG 6306 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | | | ||| | || || |||| ||||||||| | || |||||||| ||||| | Sbjct 6307 AGGAAGTCCGTGCCCGTGATCTTTTCTTGGCTCTCTGGATTCCCGACCTTTTCATGAAGC 6366 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | |||||||| ||| || |||| | | | || ||||| || || || || || | | Sbjct 6367 GTGTCGAGAAGAACGGCGAGTGGACTTTGATGTGCCCCAACGAGTGCCCTGGCCTAGCTG 6426 Query 94373 ACGTTTGTGG-ATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATC-GCAGGGCAAGGC 94430 | || | || || | ||||| | ||||| | || || | | ||| | ||| Sbjct 6427 ATGTCTACGGCGACGAG-TTTGAGGCTTTGTACGAAAAGTATGAGGCTGAAGGTCGCGGC 6485 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | || || | || |||||||||| || || | || | ||| || || Sbjct 6486 C-GCCAGAAGATCAAGGCGCAGAAGCTGTGGTATGCCATTCTTGAGGCCCAGACCGAAAC 6544 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 || | |||| ||| | | |||||| | ||| |||| ||| |||||| || ||| Sbjct 6545 CGGAAACCCCTTCATGCTTTACAAGGATCACTG-CAACCGTAAGAGCAACCAAAAGAACC 6603 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || || ||||| || |||||||| |||||| ||||||| | | || || | Sbjct 6604 TTGGTACTATTCGCAGCTCCAACCTGTGCACTGAGATTATCGAGTACTCGGCGCCTGATG 6663 Query 94610 AGATTGCTGTGTGTAACCTGG 94630 || | ||||| || ||| ||| Sbjct 6664 AGGTCGCTGTCTGCAACTTGG 6684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717640548040