Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq83 102 8e-17 seq3 96.9 3e-15 >seq1 Length=1159409 Score = 127 bits (140), Expect = 2e-24 Identities = 148/196 (76%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||| | ||| || |||||| || || ||||| | | Sbjct 849633 GACTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTGCTTACCCGCA 849692 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||||||||| || || ||||| || ||||| || | || | |||| Sbjct 849693 AAGATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGTC-TTGGATCTTCGACTTAAC 849751 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | |||||||||||||| || | ||| ||||| || || || | Sbjct 849752 GTTG-TCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGTGAGGGTCT 849810 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 849811 TGACGAAGATTTGCAT 849826 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| | || || |||||| ||||| || |||| Sbjct 849861 GATTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCG 849920 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| |||||||||||||| || || || ||||| ||||| ||| | |||| || Sbjct 849921 AAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTTGACTTGAC 849979 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||||| |||||| ||||||| || | || || || || || || | Sbjct 849980 ATTG-TCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAGGGTCT 850038 Query 138599 TTAC 138602 | || Sbjct 850039 TGAC 850042 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||||||| |||||||| || || ||| || ||||| || || ||||| | | Sbjct 850152 CTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 850211 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 || | ||||||||||| ||||| ||||| || ||||| ||| | || | || || Sbjct 850212 AATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTC-CTGAATCTTGGACTTGACAT 850270 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||||||| ||||| ||||| | || | || || ||||| ||||| || Sbjct 850271 TG-TCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTG 850329 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 850330 ACGAAGATCTGCAT 850343 >seq83 Length=135873 Score = 102 bits (112), Expect = 8e-17 Identities = 137/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||||||||| || |||| Sbjct 25682 GACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGGCCGTCCTCGAGTTGCTTGCCGGCG 25623 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| ||||||||||||||||| || || || || ||||| ||| | || | || Sbjct 25622 AAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCCTTGTC-CTGAATCTTGGACTTGAC 25564 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| ||||||||||||| || | || || || ||||| || | Sbjct 25563 ATTG-TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCT 25505 Query 138599 TTACAAA 138605 | || || Sbjct 25504 TCACGAA 25498 >seq3 Length=1020397 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 || || |||||||| || || | || |||| || || || ||||||||| | | Sbjct 108699 ATTGAGAAGGAGTTCTTGACTGAGGCTTTGCCCTGCGCCCTTCTCGGCATGAACTCCAAC 108758 Query 52686 TCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA 52745 | ||| ||||||||||||| || || || ||||||||||| || || || | | Sbjct 108759 TTGATGAAGCAGTACATCGAGTTCGTCGCTGACCGTCTGTTGGTCGCCCTTGG-CAACGA 108817 Query 52746 -AAGTACTTCAACGCTC--GCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 ||| || | || || |||| || || || || ||| | ||||| || || | ||| Sbjct 108818 GAAGGTCTAC--CGTTCCAGCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGC 108875 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| ||||||||||||||||| || || Sbjct 108876 AAGACCAACTTCTTCGAGAAGCGAGTCGGTGACTA 108910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256823251280