Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq39 100 3e-16 >seq1 Length=1159409 Score = 116 bits (128), Expect = 4e-21 Identities = 169/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || | ||||| || | ||| ||||| || || || ||||| Sbjct 849366 TACTG-TCCACCACGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTA 849424 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 |||| || |||||| ||| || | || || |||||| |||| | || |||||||| Sbjct 849425 GTCGCTCAGGGTGCGACCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATC 849484 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || || |||||||||||| ||| || ||||| |||| |||| || |||| | Sbjct 849485 AGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTG-TCGATCGTATCCGAAG 849543 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| | || | ||| ||||| |||| || || || || |||||||| Sbjct 849544 ATTCAACTTCCAATGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| ||||| || |||||||| || ||||| ||| || ||||| || |||||| | Sbjct 850152 CTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 850211 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||||||||| || |||||||| || |||||||||||| || || ||||| | Sbjct 850212 AATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATT 850271 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||||| | |||||| || | || | || ||||| || ||||| || || Sbjct 850272 GTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 850331 Query 127102 AAAAATCTGCAT 127113 || |||||||| Sbjct 850332 GAAGATCTGCAT 850343 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| |||| | || || || || ||||| || || Sbjct 849630 GTAGACTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTGCTTACCC 849689 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||| || || || || || ||||||||||| ||| ||| ||| Sbjct 849690 GCAAAGATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGACTTA 849749 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||||| ||| || |||| ||| | ||| || ||||| || || Sbjct 849750 ACGTTG-TCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGTGAGGGT 849808 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 849809 CTTGACGAAGATTTGCAT 849826 >seq39 Length=338136 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | || || ||| || ||||| || || ||| | Sbjct 214900 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAA 214959 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||||||||||||| ||||| || ||||||||||||||| || || ||||| | Sbjct 214960 GATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATT 215019 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||||| | | ||| || || | ||| | || ||||| || || || || || Sbjct 215020 GTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 215079 Query 127102 AAAAATCTGCATG 127114 || ||||||||| Sbjct 215080 GAAGATCTGCATG 215092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495456559760