Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 163 3e-35 >seq3 Length=1020397 Score = 163 bits (180), Expect = 3e-35 Identities = 540/823 (66%), Gaps = 35/823 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| ||| ||||| ||| |||||||| Sbjct 108911 GTAGTCACCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCAT 108852 Query 127291 AAAATCAAATGGGTTCTTTGA---GTT--CCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | || || || | |||| |||| | Sbjct 108851 GAAGTCGAAGGGGTTGCTGGAACGGTAGACCTTCTCGTTG-----CCAAGGGCGACCAAC 108797 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 ||||| || | |||| |||| ||||||| |||| | |||||||| |||| ||| Sbjct 108796 AGACGGTCAGCGACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGG 108737 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || || | || || | |||| ||||||||||| | || || || | ||| Sbjct 108736 GCGCAGGGCAAAGCCTCAGTCAAGAACTCCTTCTCAATGACAACGGCATCGGTGATGATC 108677 Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCA--CAG-C 127521 | ||| |||| || || | || | | | || ||| || || ||| | Sbjct 108676 TTCTCAATGAGGTCCTTGCCTGGGCGGTT-CTTCAGGTGAGAGAACAG---CAGGCAGGC 108621 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || |||||||||||||||||| |||||||| || || |||||| ||||| || Sbjct 108620 GAAGTCAGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACCGGG 108561 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||| ||||| ||||||||||||||||| || | ||| | ||| ||||||||| || Sbjct 108560 CATCAGACCACGCTTCTTCAACCAGAAGATAGAGGCAAAGGCACCACTGAAGAAGATACC 108501 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGT-ATCAAA 127698 ||| || ||||| |||| || |||| ||||||| |||| |||| | | | Sbjct 108500 CTCAACGGCAGCGAAGGCAATGAGTCGCTGAGCAAAGG---TAGACTTCTTGTCAGCGAT 108444 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 ||| | | ||||| | ||||| ||| || |||| ||| | || || | || Sbjct 108443 CCATTGGAGAGCCCAGTCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAA 108384 Query 127759 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 127818 ||| | |||| | | || || |||||||| |||| ||||| || || || || Sbjct 108383 GAGATGGGTCTTCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGAAGAGAGTACGTCTC 108324 Query 127819 GCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 127877 | ||||| | | ||| || | ||| | ||||||| | || || ||| |||| Sbjct 108323 GGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCT 108265 Query 127878 GTACCTCATCGGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAG 127934 | || ||| | || ||| | | || | ||||| || || || |||||| | | Sbjct 108264 GAACTTCA-CCGCTGAATCG--CTCGACAAGGTTCTCGTTGACGATGCCGTCGGACGCGG 108208 Query 127935 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCC 127991 | || || || ||||| | | ||| || || | ||||||| || | ||| Sbjct 108207 CGAAGAAGGCAAGGATGTGGGAGACGAAAAACTTCTCGTCATCGTTCAATCGGTTACTCC 108148 Query 127992 AGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| | |||||||| |||||||| | |||||| |||||||| Sbjct 108147 AGTCATGAAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCA 108105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500305712840