Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq83 132 1e-25 seq1 118 2e-21 seq39 107 5e-18 >seq83 Length=135873 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||||||||| |||||||| |||| ||||||||||| | || | || || Sbjct 25700 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGGCCGTCC 25641 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| |||||||| |||||||| |||||| || ||| Sbjct 25640 TCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCC 25581 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 25580 TGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 25521 Query 199598 TTACCCGTGAGAGTTTTCACAAA 199620 || ||||| || || ||||| || Sbjct 25520 TTGCCCGTCAGGGTCTTCACGAA 25498 >seq1 Length=1159409 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||||||||| || |||||||| || | ||||||||| | ||| Sbjct 849606 CGAAGTCGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTGAGAGTT 849665 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| || ||||| ||||| || || || Sbjct 849666 CGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGGTCAGGCGGGATACCC 849725 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| |||||| | | || || || | Sbjct 849726 TCCTTGTCTTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGG 849785 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| ||||| || || || || ||||| Sbjct 849786 GTGATCGTCTTACCGGTGAGGGTCTTGACGAAGATTTG 849823 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||||||||| || ||||| || | ||||||||| | | || | || || Sbjct 849843 AGGACAAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCC 849902 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| |||||||| ||||| || ||| ||||| ||| Sbjct 849903 TCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCC 849962 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| || |||| ||||| | | || || || | || || ||| Sbjct 849963 TGAATCTTTGACTTGACATTGTCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTC 850022 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || ||||| || || || Sbjct 850023 TTTCCGGTGAGGGTCTTGAC 850042 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| |||| ||||||||| || || | ||||| Sbjct 849387 AGGACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCC 849446 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || |||||||| ||||| ||||| || || ||||| || ||| Sbjct 849447 TCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 849506 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| || || | | ||| || ||||| ||||||||| Sbjct 849507 TGGATCTTGCTCTTGACGTTGTCGATCGTATCCGAAGATTCAACTTCCAATGTGATCGTC 849566 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || || || || Sbjct 849567 TTGCCCGTCAAGGTCTTGACGAAGATCTG 849595 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || ||||||||||| |||||| || | || ||| | ||||| Sbjct 850132 AGGACAAGGTGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCC 850191 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || | ||||| ||||| ||| || || || ||| Sbjct 850192 TCAAGCTGCTTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCC 850251 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || | ||||| | | || || || | ||||| ||| Sbjct 850252 TGAATCTTGGACTTGACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 850311 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || || || Sbjct 850312 TTGCCAGTGAGAGTCTTGACGAAGATCTG 850340 >seq39 Length=338136 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||| |||| ||||||||| | | || | ||||| Sbjct 214880 AGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 214939 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| | ||||||||||| || || || || ||| Sbjct 214940 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 214999 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||||| | | || || || | ||||| ||| Sbjct 215000 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 215059 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || Sbjct 215060 TTGCCCGTGAGGGTCTTGACGAAGATCTG 215088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178908020665233