Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq39 143 3e-29 seq1 123 3e-23 seq83 118 1e-21 >seq39 Length=338136 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| ||||||||||| || || || | || ||||||||||||||| Sbjct 214895 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCG 214954 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| ||||| ||||||||||||| || | || |||||||||| ||||| |||| Sbjct 214955 GCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 215014 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| || ||||| || | ||||| || |||||||| || || Sbjct 215015 ACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 215074 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||| ||||| Sbjct 215075 TTGACGAAGATCTGCAT 215091 >seq1 Length=1159409 Score = 123 bits (136), Expect = 3e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||||||||| ||||| || || |||||||| | || || |||||||| || Sbjct 850147 GTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGCTTACCA 850206 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| ||||| ||||| ||||||| || | | |||||||||| ||||| |||| Sbjct 850207 GCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 850266 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| || || || || | |||||||| ||||| || || || Sbjct 850267 ACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTC 850326 Query 46577 TTAACAAAGATTTGCATTTTG 46597 || || ||||| ||||| ||| Sbjct 850327 TTGACGAAGATCTGCATCTTG 850347 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||| ||||| || |||| || |||||||| || || || Sbjct 849635 CTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTGCTTACCCGCAAA 849694 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||| | ||| | | ||||||||| ||||||| ||| | ||| Sbjct 849695 GATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGACTTAA-CGT 849753 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| ||| ||||| || | ||||| || || || || || || || | Sbjct 849754 TGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGTGAGGGTCTTGA 849813 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 849814 CGAAGATTTGCAT 849826 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||||||||| || || |||| || || |||||||||||||| Sbjct 849864 TCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAG 849923 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||| ||||||| || | || ||||||||| ||||| ||||| | Sbjct 849924 ATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGACTTGACATTG 849983 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| || || || | || ||||| || || || || || || || Sbjct 849984 TCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGAC 850042 >seq83 Length=135873 Score = 118 bits (130), Expect = 1e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | || |||||| ||||| |||||||| || || || || | Sbjct 25704 ACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGGCC 25645 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||| |||||||||||||| |||| ||||| ||||| | || | | |||||| Sbjct 25644 GTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCCTT 25585 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| ||||| | | | |||||| || ||||| || | ||||| Sbjct 25584 GTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 25525 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 ||| ||||||||||| || || || ||| Sbjct 25524 GGTCTTGCCCGTCAGGGTCTTCACGAAG 25497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565232048133480