Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 212 6e-50 seq83 122 9e-23 seq1 122 9e-23 seq39 109 5e-19 >seq3 Length=1020397 Score = 212 bits (234), Expect = 6e-50 Identities = 560/845 (66%), Gaps = 15/845 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || || || || ||||| || || || || || || | | ||| ||| | Sbjct 108916 TTTTGGTAGTCACCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTC 108857 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 ||| || || ||||||||| | |||| ||| | |||| | || |||| Sbjct 108856 TCCATGAAGTCGAAGGGGTTGCTGGAACGGTAGACCTTCTCGTTGCCAA---GGGCGACC 108800 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 | ||| | ||| || |||||||||||||| ||| ||| | | | || | || || Sbjct 108799 AACAGACGGTCAGCGACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGA 108740 Query 132781 AGA-CGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 || |||| |||| || || || | ||| | || ||| ||| | || || ||||||| Sbjct 108739 AGGGCGCAG-GGCAAAGCCTCAGTCAAGAACTCCTT-CTCAATGACAACGGCATCGGTGA 108682 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898 ||| | | || | | || || || || | | || || ||||| || ||| | Sbjct 108681 TGATCTTCTCAATGAGGTCCTTGCCTGGGCGGTTCTTCAGGTGAGAGAACAGCAGGCAGG 108622 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 | ||||| || | |||||||| | || ||||| |||||| ||| || | |||| Sbjct 108621 CGAAGTCAGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACCGG 108562 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 |||| || || || || || | ||| || || | ||| || || ||||||| | Sbjct 108561 GCATCAGACCACGCTTCTTCAACCAGAAGATAGAGGCAAAGGCACCACTGAAGAAGATAC 108502 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTCTTTGCTGGCGATC 133077 |||| ||||| ||||| || | || |||| | || || | |||||| | | ||||| Sbjct 108501 CCTCAACGGCAGCGAAGGCAATGAGTCGCTGAGCAAAGGTAGACTTCTTGTCAG-CGATC 108443 Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137 || | || ||||| || ||||| || ||| || || || || |||||||| || Sbjct 108442 CATTGGAGAGCCCAGTCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAG 108383 Query 133138 AAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCC 133197 | | || |||| | | | |||||| || ||||| || ||| | || Sbjct 108382 AGATGGGTCTTCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGAAGAGAGTACGTCTCG 108323 Query 133198 GAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGC 133257 ||||| | ||||||||| ||| || |||||||| ||||| || |||||| | ||| Sbjct 108322 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGA 108263 Query 133258 ACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAA 133317 ||||| ||| |||||||| || || |||||||||||||||||| |||||||| Sbjct 108262 ACTTCACCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAG 108203 Query 133318 AAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT---CCCAGTCG 133374 ||||| || | ||| || |||| ||||| |||||||| || | |||||| Sbjct 108202 AAGGCAAGGATGTGGGAGACGAAAAACTTCTCGTCATCGTTCAATCGGTTACTCCAGTCA 108143 Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434 | |||||||| || || | ||||||| | ||||| || || |||||| || ||| Sbjct 108142 TGAAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGTGCTTCTTG 108083 Query 133435 TACAT 133439 ||||| Sbjct 108082 TACAT 108078 >seq83 Length=135873 Score = 122 bits (134), Expect = 9e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| || ||| | |||||| | | Sbjct 25498 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATC 25557 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || || | ||||| |||||||||||| | ||||||||||| || Sbjct 25558 GACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAACAGCGTCTG 25617 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| || || || |||| || || ||| |||||||||||||| ||| Sbjct 25618 ATCTTCGCCGGCAAGCAACTCGAGGACGGCCGAACGCTCTCTGACTACAACATCCAGAAG 25677 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || ||||||| ||| Sbjct 25678 GAGTCCACTCTCCACCTGGTGCTCCGT 25704 >seq1 Length=1159409 Score = 122 bits (134), Expect = 9e-23 Identities = 146/193 (76%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || |||||| |||| || ||| | | Sbjct 849826 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACGATCACCCTCGAGGTGGAGTCGTCG 849767 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| |||| || |||| ||||| ||||| || |||||| |||| Sbjct 849766 GACACCATCGACAACG-TTAAGTCGAAGATCCAAGACAAGGAGGGTAT-CCCGCCTGACC 849709 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||||| || |||||||| |||| || || |||| |||||||| Sbjct 849708 AACAGCGACTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGAACTCTCAGCGACTACA 849649 Query 38422 ACATCCAAAAGGA 38434 |||| || ||||| Sbjct 849648 ACATTCAGAAGGA 849636 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38248 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA 38307 ||| | |||| || || ||||| || || ||||| ||| |||| |||||| | |||||| Sbjct 850050 AAACAGTCGTCAAGACCCTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCGTCCGACA 849991 Query 38308 GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGC 38367 | | | | || ||| || | ||||| || || |||||| |||||||||||| Sbjct 849990 CAATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGACCAACAGC 849931 Query 38368 GGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 38427 | || || | ||| ||||| || || || |||| || ||||| |||||||||||| | Sbjct 849930 GTCTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTATCCGACTACAACATTC 849871 Query 38428 AAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | |||||| | || || || | || || ||| Sbjct 849870 AGAAGGAATCTACTCTCCACCTTGTCCTTCGT 849839 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| || Sbjct 850346 AAGATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCC 850287 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | || || || | ||||| ||||| || || ||||| Sbjct 850286 TCCGACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGAC 850227 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| | |||| ||| || || ||||| || || | ||||| || || ||| Sbjct 850226 CAACAGCGATTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCGGATTAC 850167 Query 38421 AACATCCAAAAGGA 38434 |||||||||||||| Sbjct 850166 AACATCCAAAAGGA 850153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| || ||||| | || || || | | Sbjct 849598 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACGATCACATTGGAAGTTGAATCTTCG 849539 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || | | | | |||| || |||| ||||| |||||||| || | || || Sbjct 849538 GATA-CGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 849480 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | ||| || || || |||| || | |||||||| | ||||||||| Sbjct 849479 GCAACGTCTTATCTTCGCTGGTAAGCAATTGGAGGATGGTCGCACCCTGAGCGACTACAA 849420 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | ||||| || ||||| || ||| Sbjct 849419 CATCCAGAAGGAGTCCACGCTCCACTTGGTCCTCCGT 849383 >seq39 Length=338136 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | || Sbjct 215091 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 215032 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || || | ||||| ||||| || ||| ||||||| Sbjct 215031 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 214972 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||||| || || | || |||||| |||||||||| Sbjct 214971 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAAC 214912 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| ||| || || || | || || ||| || | || ||| Sbjct 214911 ATCCAGAAGGAGAGC-ACCCTCCACCTCGTCCTCCGTCTGCGTGGTGGC 214864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167179308160