Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq21 187 3e-42 seq3 91.5 2e-13 >seq21 Length=436828 Score = 187 bits (206), Expect = 3e-42 Identities = 608/931 (65%), Gaps = 19/931 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || |||| || ||||| ||||| ||||| |||||| | | |||||| | | Sbjct 6700 GGCAGAGCGAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGCGCCGAGTACTCGATA 6641 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| |||||| || ||| || || | ||||||||||| ||||| | Sbjct 6640 ATCTCAGTGCACAGGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGGTTGCTCTTACGG 6581 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| ||||||||| |||||| |||| | || || || ||||| | || ||||| Sbjct 6580 TTGCAGTGATCCTTGTAAAGCATGAAGGGGTTTCCGGTTTCGGTCTGGGCCTCAAGAATG 6521 Query 106637 GCCTTCCACA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACT 106694 || | ||||| | || ||| | || | ||||| | | || || || ||||| |||| Sbjct 6520 GCATACCACAGCTTCTGCGCCTTGATCTTCTGGCG--GCCGCGACCTTCAGCCTCATACT 6463 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 106754 || ||| | || |||||||| || || | || | || || || || || | Sbjct 6462 TTTCGTACAAAGCCTCAAACTCGTCGCCGTAGACATCAGCTAGGCCAGGGCACTCGTTGG 6403 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | | || ||| | || || ||| || ||||||||||||||||| ||||||| Sbjct 6402 GGCACATCAAAGTCCACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCC 6343 Query 106815 ACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 | || | | || ||||| | ||| || | || || | || ||||| || | Sbjct 6342 AGAGAGCCAAGAAAAGATCACGGGCACGGA-CTTCCTCCTTGCCGTGGTTCTTGCGAAGG 6284 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---- 106929 || |||||||| | || ||||| |||||| |||||||| |||| |||| | || Sbjct 6283 TCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGT 6224 Query 106930 CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 || | | | ||| | || | || || | || ||| || || || |||||||| || Sbjct 6223 CTCTTGTTG-CCACCCTGGTCAACGTATCTAGCAGTGTTATTGAAGACACGAAGCATGGG 6165 Query 106990 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 107049 | ||| || | || ||| || || || ||| ||| | || | | | Sbjct 6164 TACAATTCCGTTCGAGGTACCGTTGGTTCCAGCGATATAAGAGCCGGTAGCACGGATACG 6105 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 ||||||| | |||||||| |||||| ||| ||||| ||||| | | || || Sbjct 6104 GTGGATGTTGAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGT 6045 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | |||||||||| || ||| ||||| | ||| |||||||| |||| ||| Sbjct 6044 ATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACGAGGAAGCAGGAAGACAACTG 5985 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 107228 | | ||| || || || || ||||| || || | || || |||| ||| | | | Sbjct 5984 TGCTTGTGGCGTTCCGGCGTTAAAGAGAGTGGGGGAAGCATGGGTGAA-GTACTTGTTCG 5926 Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCA 107288 ||||| || ||| || | | || |||| || || || ||| |||| ||| | Sbjct 5925 ACATCAAGTTGTAGGTTTGAATAACCTTCTCAACATCGTCACCCCAGATACCGACGGCAA 5866 Query 107289 CACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTG---AAGAT 107345 ||||||| | ||||| || ||| | || | | | |||| ||| ||| ||| Sbjct 5865 CACGCATGATCATGTGCTGCGGTCTCTCTACAATCTTCTCATCAAGC--TTGAGCAAGTA 5808 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 || || ||| | ||| |||| ||||||||| Sbjct 5807 AGATC-GCTCCAAGGTCTTGAAACCAAAGTA 5778 >seq3 Length=1020397 Score = 91.5 bits (100), Expect = 2e-13 Identities = 333/514 (65%), Gaps = 17/514 (3%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || || || || || || || |||||| || || ||||| ||||| Sbjct 108611 GTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATCAGACC 108552 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||||||| | |||| | || | || ||||||||||||||| || Sbjct 108551 ACGCTTCTTCAACCAGAAGATAGAGGCAAAGGCACCACTGAAGAAGATACCCTCAACGGC 108492 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA---AACCATTTCAT 117461 || || |||| || |||| || |||| |||||| ||||| | ||||| | Sbjct 108491 AGCGAAGGCAATGAGTCGCTGAGCAAAGG---TAGACTTCTTGTCAGCGATCCATTGGAG 108435 Query 117462 TGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTT 117521 ||||| | ||||| || || || | || | ||||| | || | || | Sbjct 108434 AGCCCAGTCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGATGGGT 108375 Query 117522 CTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAAC 117581 ||| | | ||||| ||||| | ||||| | || || || ||| || | Sbjct 108374 CTTCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGAAGAGAGTACGTCTCGGAGTGGAT 108315 Query 117582 CAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCAT 117640 | | ||| ||| | || | ||||||| | || || ||| ||||| |||||| Sbjct 108314 GTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGGGATCTGAACTTCA- 108257 Query 117641 CCGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATG 117697 |||| ||| | | || | ||||| || || || |||||| | || ||||| | Sbjct 108256 CCGCTGAATCG--CTCGACAAGGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAGAAGG 108199 Query 117698 CCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTCGTCAA 117754 | ||||||| | ||| ||| || | || |||| || | ||||||| | || Sbjct 108198 CAAGGATGTGGGAGACGAAAAACTTCTCGTCATCGTTCAATCGGTTACTCCAGTCATGAA 108139 Query 117755 GATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 |||| ||||| | ||||| || || |||||||| Sbjct 108138 GATCCTTGGAGAGATCAATCTCCTCGGCAGTCCA 108105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974170090760