Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 159 8e-34 seq83 140 7e-28 seq39 134 3e-26 >seq1 Length=1159409 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||||||||| || || ||||| || ||||| ||||| ||| ||||||| Sbjct 849609 AGTCGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGG 849668 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || ||||||||||| || ||||||||||| |||||||| || || || || || Sbjct 849669 CCGTCCTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGGTCAGGCGGGATACCCTCC 849728 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 849729 TTGTCTTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTG 849788 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | || || ||||| | |||||| Sbjct 849789 ATCGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 849826 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| || || || ||||| ||||| |||| || |||| || || || Sbjct 849846 ACAAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCCTCA 849905 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || || |||||||| || ||||||||||| ||||| ||| Sbjct 849906 AGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGA 849965 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||| || || || ||||| || || || || ||||||| |||||| Sbjct 849966 ATCTTTGACTTGACATTGTCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTT 850025 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || || | || || |||| Sbjct 850026 CCGGTGAGGGTCTTGACGA 850044 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||| ||| ||||| || |||||||| | ||||| | ||||| || Sbjct 850135 ACAAGGTGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCA 850194 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| ||||| || | ||| |||||||| ||||| || || || ||||| ||| Sbjct 850195 AGCTGCTTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGA 850254 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || ||||| ||||| || || || ||||| || | ||||| Sbjct 850255 ATCTTGGACTTGACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 850314 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 850315 CCAGTGAGAGTCTTGACGAAGATCTGCAT 850343 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| ||| || || | ||||| || | || Sbjct 849395 GTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCCTCCAATTG 849454 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||| ||||| || || || || || || || ||||| || || || Sbjct 849455 CTTACCAGCGAAGATAAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 849514 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || || |||||| ||| ||||| | || | |||||| || || Sbjct 849515 GCTCTTGACGTTGTCGATCGTATCCGAAGATTCAACTTCCAATGTGATCGTCTTGCCCGT 849574 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 849575 CAAGGTCTTGACGAAGATCTGCAT 849598 >seq83 Length=135873 Score = 140 bits (154), Expect = 7e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || |||| || || ||| Sbjct 25697 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGGCCGTCCTCG 25638 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || || |||||||| || ||||| || || ||||| ||| Sbjct 25637 AGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 25578 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| ||||| || ||||| | ||||| Sbjct 25577 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 25518 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || |||| || || ||||| Sbjct 25517 CCCGTCAGGGTCTTCACGAA 25498 >seq39 Length=338136 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || || || ||||| |||| || |||| ||||| ||| Sbjct 214883 ACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG 214942 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | ||| || ||||| || || ||||| || ||||| ||| Sbjct 214943 AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGA 215002 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || ||||| ||| ||||| |||||||| | ||||| Sbjct 215003 ATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTG 215062 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 215063 CCCGTGAGGGTCTTGACGAAGATCTGCAT 215091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109468820505533