Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq39 96.9 3e-15 seq83 93.3 3e-14 >seq1 Length=1159409 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| ||||| || |||||||| || ||| | || | || || | |||| Sbjct 850141 TGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGC 850200 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| || || |||| ||||||||| || | || | ||||||||||| |||||| Sbjct 850201 TTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTG 850260 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || | ||| ||||| | || || || || || || Sbjct 850261 GACTTGACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTG 850320 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTG 48770 | ||| || || || ||||||||| || Sbjct 850321 AGAGTCTTGACGAAGATCTGCATCTTG 850347 >seq39 Length=338136 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || || || ||||| || || || |||| | || || | |||| Sbjct 214889 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGC 214948 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || |||| |||||| || || | ||| | |||||||||||| |||||| Sbjct 214949 TTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTG 215008 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || | ||||||||| | || || || || ||||| Sbjct 215009 GACTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 215068 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 215069 AGGGTCTTGACGAAGATCTGCAT 215091 >seq83 Length=135873 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || || || ||||| ||||| || |||| Sbjct 25706 AGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGG 25647 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| ||||| || ||||| |||||||| |||| ||||| |||||| Sbjct 25646 CCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCC 25587 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||||||||| | || Sbjct 25586 TTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 25527 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAA 48757 || || || ||||||| || || || || Sbjct 25526 ATGGTCTTGCCCGTCAGGGTCTTCACGAA 25498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933426233377