Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11]
899 sequences; 37,704,138 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1 98.7 8e-16
seq39 96.9 3e-15
seq83 93.3 3e-14
>seq1
Length=1159409
Score = 98.7 bits (108), Expect = 8e-16
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || |||||||| ||||| || |||||||| || ||| | || | || || | ||||
Sbjct 850141 TGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGC 850200
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
||||| || || |||| ||||||||| || | || | ||||||||||| ||||||
Sbjct 850201 TTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTG 850260
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | || || || | ||| ||||| | || || || || || ||
Sbjct 850261 GACTTGACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTG 850320
Query 48744 AAAGTTTTTACAAAAATCTGCATCGTG 48770
| ||| || || || ||||||||| ||
Sbjct 850321 AGAGTCTTGACGAAGATCTGCATCTTG 850347
>seq39
Length=338136
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || |||||||| || || || ||||| || || || |||| | || || | ||||
Sbjct 214889 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGC 214948
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| ||||| || |||| |||||| || || | ||| | |||||||||||| ||||||
Sbjct 214949 TTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTG 215008
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | || || || | ||||||||| | || || || || |||||
Sbjct 215009 GACTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 215068
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| || || || || ||||||||
Sbjct 215069 AGGGTCTTGACGAAGATCTGCAT 215091
>seq83
Length=135873
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || || ||| ||| || || || ||||| ||||| || ||||
Sbjct 25706 AGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGG 25647
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| ||||| || ||||| |||||||| |||| ||||| ||||||
Sbjct 25646 CCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCC 25587
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || ||| | | | || || | ||||||||| | ||
Sbjct 25586 TTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 25527
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAA 48757
|| || || ||||||| || || || ||
Sbjct 25526 ATGGTCTTGCCCGTCAGGGTCTTCACGAA 25498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380933426233377
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |