Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 158 2e-33 seq21 143 5e-29 >seq3 Length=1020397 Score = 158 bits (174), Expect = 2e-33 Identities = 554/860 (64%), Gaps = 28/860 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACT-CAAACTGGACCGCCGAAGAGATTGATCT 25535 || ||| |||||||||||||| | | | || | |||||| ||||| ||||||||||| Sbjct 108069 ATCTGGCAGATGTACAAGAAG-CACGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCT 108127 Query 25536 GGCCAAGGACATGGACGGCTGG--TA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||| | | | |||| || || | | | | |||||| || ||| || Sbjct 108128 CTCCAAGGATCTTCATGACTGGAGTAACCGATTGAACGAT-GACGAGAAGTTTTTCGTCT 108186 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || | | || ||||| || || || || || || || |||||||| || |||| Sbjct 108187 CCCACATCCTTGCCTTCTTCGCCGCGTCCGACGGCATCGTCAACGAGAACCTTGTCGAGC 108246 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 |||||| | | ||||| ||| | ||||| || |||||||| |||||||| | Sbjct 108247 GATTCAGCGGTGAAGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGA 108306 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768 | || || | ||||| ||| ||| | ||||| || || ||||| | || Sbjct 108307 TGGAGAACATCCACTCCGAGACGTACTCT---CTTCTCATTGATACCTACATCAAGGAGC 108363 Query 25769 TCGCCGAGAGAGATCGG-CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 |||| ||| ||| | || || ||||| || ||| ||| ||||| | ||| Sbjct 108364 CCGCCCAGA-AGACCCATCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAG 108422 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 || ||||| | | |||||| | ||| |||| |||| |||| || | Sbjct 108423 GCTGACTGGGCTCTCCAATGGATCGCTGACAAGAAGTCTACCTTTGCTCAGCGACTCATT 108482 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 ||||| ||||| || ||||| ||||| ||||| ||| | ||||| | ||||||||| | Sbjct 108483 GCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTTGCCTCTATCTTCTGGTTG 108542 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || |||||||| || ||| ||||||||||||||| | |||||| Sbjct 108543 AAGAAGCGTGGTCTGATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCTCGTGACGAG 108602 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC- 26066 |||||||||| || || ||||||||||| | | | ||| || | |||| | Sbjct 108603 GGTCTCCACACTGACTTCGCCTGCCTGCTGTTCTC---TCACCTG----AAGAACCGCCC 108655 Query 26067 --TCAAGAGAC--CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTC 26122 |||| ||| | | | | ||||||| || || || | || ||||||||||| Sbjct 108656 AGGCAAG-GACCTCATTGAGAAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCT 108714 Query 26123 NNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACA 26182 | ||||||||| || | |||| || |||| Sbjct 108715 TGACTGAGGCTTTGCCCTGCGCCCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACA 108774 Query 26183 TTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC 26242 | |||| || || |||| |||| || | || || || | ||||| || | Sbjct 108775 TCGAGTTCGTCGCTGACCGTCTGTTGGTCGCCCTTGGCAACGAGAAGGTCTACCGTTCCA 108834 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 ||||| |||||||| ||||| ||||| || | | || |||||||||||||| || | Sbjct 108835 GCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGA 108894 Query 26303 AGAGGGTCGGCGACTATCAA 26322 || | ||||| ||||| ||| Sbjct 108895 AGCGAGTCGGTGACTACCAA 108914 >seq21 Length=436828 Score = 143 bits (158), Expect = 5e-29 Identities = 686/1068 (64%), Gaps = 47/1068 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT-TGGCCTCGGG 221475 |||| |||| | |||||||||||||| || || |||||| || || | ||||||| || Sbjct 6970 GTCAAGGCACCATGGTAGATGGTCTCGAAAATTTGCTTGTTCAG-CTGTCTGGCCTCAGG 6912 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 || ||| ||||| |||| | ||||| ||| || || ||||| || || | || Sbjct 6911 CGACTCGAAAGGCATGCGCAATGCCAAGAAAGT-GTCAGCAAGACCCTGAACACCAAGAC 6853 Query 221535 CGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 | ||||| | ||||| | ||||| | ||| || || || || || || ||||||| Sbjct 6852 CAATGGGACGGTGTCGCATGTTGCTGTTGCGA--GCCTCCGGGACAGGGTAGTAGTTGAC 6795 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||||| | |||| ||||| | || || | || || ||| || ||||||| Sbjct 6794 ATCGATGATTCTGTTCAGGTTACGGACGACAACCTGTACGACATCGTGCAACTTCTGG-- 6737 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 || | | | ||| ||| | || || |||| || || | Sbjct 6736 ----AAGTCGTAGTTGCCCTCGTTATAA------TCAACGAAAGACGGCAGAGCGAGAGA 6687 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||| ||| || || || ||||| || | |||| || ||||| || || || Sbjct 6686 AGCCAAGTTGCAGACAGCGACCTCATCAGGCGCCGAGTACTCGATAATCTCAGTGCACAG 6627 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCT 221831 |||| || || || || |||| || || || ||| || ||| ||| | |||| Sbjct 6626 GTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGGTTGCTCTTACGGTTG-CAGTGATCCT 6568 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| ||||| ||||| || || || ||| ||| | ||||| | ||| || | Sbjct 6567 TGTAAAGCATGAAGGGGTTTCCGGTTTCGGTCTGGGCCTCAAGAATGGCATACCACAGCT 6508 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCG--GTATAG 221947 |||| || | | | || | | | || ||| || | || ||||| ||| | Sbjct 6507 -TCTGCGCCTTGATCTTC-TGGCGGCCGCGACCTTCAGCCT---CATACTTTTCGTACAA 6453 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 ||| | |||||| || ||||| | || | ||||| || ||| | ||| |||||| Sbjct 6452 AGCCT--CAAACTCGTCGCCGTAGACATCAGCTAGGCCAGGGCACTCGTTGGGGCACATC 6395 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 | | |||| | ||| | | ||| | || |||||| ||||| || ||||| || ||| Sbjct 6394 AAAGTCCACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCCAGAGAGCC 6335 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 || ||||| | || || |||||| ||||| ||| || | || || | ||| Sbjct 6334 AAGAAAAGATCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAC 6275 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || || | || | |||||| ||||| || |||| ||| | || || |||| ||||||| Sbjct 6274 TCGAAGACATCCGAGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGTCTCTTGTTG 6215 Query 222188 CCACCCTGATCCACCATCCTCTCCAG-AGCG---TTGAAGATGCGAAGGGTCGGTACCAG 222243 |||||||| | || | | || || || | ||||||| ||||| | ||||| | Sbjct 6214 CCACCCTGGT----CAACGTATCTAGCAGTGTTATTGAAGACACGAAGCATGGGTACAAT 6159 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TG 222301 |||||| || ||||||||| || || || | ||| || | || ||| || Sbjct 6158 TCCGTTCGAGGTACCGTTGGTTCCAGCGATATAAGAGCCGGTAGCAC---GGATACGGTG 6102 Query 222302 GCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | | || |||||||| || || ||||||||||| ||| ||||||| || || Sbjct 6101 GATGTTGAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTATC 6042 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| || || || ||| ||||| | | | || || || || |||| ||| | Sbjct 6041 GTAGATACCGTCAATGCTGTCATCCTTCATATCGACGAGGAAGCAGGAAGACAACTGTGC 5982 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 || | | | ||||||||| || ||||| || || || ||||| Sbjct 5981 TTGTGGCGTTCCGGCGTTAAAGAGAGTGGGGGAAGCATGGGTGAAGTA 5934 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||||| | | ||| | ||| |||||| | || Sbjct 7262 GTTAACGACCTGGAACTCACCAGCAAGCACACGACGAGAGTAGATGTTCGAAGTGTAAGG 7203 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| | ||||||||| ||||| ||||| | |||||||| |||||||| || || || Sbjct 7202 CTCGAAACACTCGTTGTTACCCAGAATCTGGGATGTGCTGGCAGTGGGCATAGGAGCGAC 7143 Query 221236 CAGCAGACTGTTGCG 221250 || |||||||||||| Sbjct 7142 CAACAGACTGTTGCG 7128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928834362106560