Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq202 87.8 4e-12 >seq202 Length=12903 Score = 87.8 bits (96), Expect = 4e-12 Identities = 262/377 (69%), Gaps = 48/377 (13%) Strand=Plus/Plus Query 24918 aaataatttaat-atcacatatattatt-tttaaataattataag-aataatttaaaaat 24974 ||| ||||||| || | || |||||| |||| ||| ||||| |||||||||||||| Sbjct 5794 AAAAAATTTAAAGATAATTTAAATTATTATTTATATA--TATAATTAATAATTTAAAAAT 5851 Query 24975 gtatttaccatcatcatataa--atta---taaatat--aattataacaatcga--agtt 25025 |||||| | | | || ||| |||| ||| ||| | ||||| || | | || Sbjct 5852 -TATTTAACTTT-TAATTTAATTATTAATTTAATTATTTATTTATATTTATATATTAATT 5909 Query 25026 tatattctccattatttttatattttttcaa----ataaattactatataattt--agtt 25079 ||| || | |||| || ||| ||||| | ||||||| || ||||||| | | Sbjct 5910 TATTTTTTAAATTAATTATATCGTTTTTTTATTATATAAATTTTTAAATAATTTTAAATG 5969 Query 25080 atttttatattaac---taccagtatatatttaactatatttataa-aaataatactg-t 25134 ||||||| ||| | || | |||| |||||| | |||||| | |||||| | | | Sbjct 5970 ATTTTTAAATTTAAATTTATTAATATA-ATTTAATAAAATTTATTATAAATAAAATTTAT 6028 Query 25135 gatga-tata--ttataataattaatattaatggaaatattttatttttataa---aata 25188 || | || | |||| |||| ||| ||| || |||||| | ||||||||| |||| Sbjct 6029 TATAAATAAAATTTATTATAAATAAAATTTAT---AATATTATTTTTTTATAATTAAATA 6085 Query 25189 aaaataacagatataattgataaatccattta--aa-----agaagatatattaatatat 25241 ||||||| | ||| | | |||||| ||||| || | || |||| ||||||||| Sbjct 6086 AAAATAAAA-ATAAATTATATAAATA-ATTTATTAATTATTATAAAATAT-TTAATATAT 6142 Query 25242 t-ttatTAAAAGTAAAT 25257 ||||||||||||||| Sbjct 6143 AATTATTAAAAGTAAAT 6159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984468660328650