Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq21 143 8e-29 seq3 138 3e-27 seq43 86.0 2e-11 >seq21 Length=436828 Score = 143 bits (158), Expect = 8e-29 Identities = 538/829 (65%), Gaps = 21/829 (3%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||||||| ||||||||| || || || || || | ||||| ||||| Sbjct 6650 GTACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGGTT 6591 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 |||| ||| || ||||||||| || ||| | ||| |||| || || |||| || Sbjct 6590 GCTCTTACGGTTGCAGTGATCCTTGTAAAGCATGAAGGGGTTTCCGGTTTCGGTCTGGGC 6531 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || | || | | | ||||| | Sbjct 6530 CTCAAGAATGGCATACCACAGCTTCTGCGCCTTGATCTTCTGGCGGCCGCGACCTTCAGC 6471 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||| |||| || | ||| | | || || ||||| |||| || |||||| Sbjct 6470 CTCATACTTTTCGTACAAAGCCTCAA--ACTCGTCGCCGTAGACATCAGCTAGGCCAGGG 6413 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAAT 155924 |||| | |||||| | || | ||| || || ||| |||||| ||| || Sbjct 6412 CACTCGTTGGGGCACATCAAAGTCCACTCGCCGTTCTTCTCGA---CACGCTTCATGAAA 6356 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACT-CCTCATCGCCGTG 155983 | || ||| | ||| ||||||| || | || |||| |||| | |||||| Sbjct 6355 AGGTCGGGAATCCAGAGAGCCAAGAAAAGATCACGGGCACG-GACTTCCTCCTTGCCGTG 6297 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 ||||| || || || | ||| || | ||| | || ||||| || || || || Sbjct 6296 GTTCTTGCGAAGGTCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAAGGTAGATGGC 6237 Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 || |||| |||||| |||||||| || || || | |||||| ||||||||||| Sbjct 6236 GAAGGCACCAGGTCTCTTGTTGCCACCCTGGTCAACGTATCTAGCAGTGTTATTGAAGAC 6177 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAACCAG 156159 || ||||| || | ||| || || || || || |||||||| ||| |||| || || | Sbjct 6176 ACGAAGCATGGGTACAATTCCGTTCGAGGTACCGTTGGTTCCAGCG-ATATAAGAGCCGG 6118 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCG 156218 | || | | || || | || ||||||||||| | |||| || || || || Sbjct 6117 TAGCACGGATACGGTGGATGTTGAGACCAATACCACCAG-CCATCTTGGAGATCATGGCA 6059 Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAG 156278 || ||| | |||| | | ||||| ||||| ||||| | ||| | || || Sbjct 6058 CAGGTCTTGAGGGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACGAGGAAG 5999 Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338 || ||| || || | | |||| ||||| ||||| || || || || | ||||| | Sbjct 5998 CAGGAAGACAACTGTGCTTGTGGCGTTCCGGCGTTAAAGAGAGTGGGGGAAGCATGGGTG 5939 Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCCGTG 156397 || ||||| || ||||| | | ||| || | ||| |||||||| || |||| | Sbjct 5938 AAGTACTTGTTCGACATCAAGTTGTAGGTTTGAATAACCTTCTCAACATCGTCACCCCAG 5879 Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATC 156446 |||| || | || | ||| ||| ||||| || | |||||||||| Sbjct 5878 -ATACCGACGGCAACACGCATGATCATGTGCTGCGGTCTCTCTACAATC 5831 >seq3 Length=1020397 Score = 138 bits (152), Expect = 3e-27 Identities = 252/369 (68%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 || |||||||| | |||| || || ||| || || | ||||| |||||| || Sbjct 108255 GGTGAAGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAAC 108314 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 ||||| || || || ||| ||| |||||||| |||||||| || ||| ||||||| Sbjct 108315 ATCCACTCCGAGACGTACTCTCTTCTCATTGATACCTACATCAAGGAGCCCGCCCAGAAG 108374 Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468 | | || |||||||||||| | | || || || || ||||||||||| Sbjct 108375 ACCCATCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGGCTGACTGGGCT 108434 Query 133469 ATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTA 133528 | |||||||| |||||| | | |||||| || ||| |||| || |||| Sbjct 108435 CTCCAATGGATCGCTGACAAGAAGTCTACCTTTGCTCAGCGACTCATTGCCTTCGCTGCC 108494 Query 133529 GTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGT 133588 || ||||| || || ||||||||||| || |||||| || ||| | || ||||||||| Sbjct 108495 GTTGAGGGTATCTTCTTCAGTGGTGCCTTTGCCTCTATCTTCTGGTTGAAGAAGCGTGGT 108554 Query 133589 ATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACC 133648 | | || || || || || ||||| || || || | ||||||| || ||||| Sbjct 108555 CTGATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACT 108614 Query 133649 GAATTTGCC 133657 || || ||| Sbjct 108615 GACTTCGCC 108623 >seq43 Length=264471 Score = 86.0 bits (94), Expect = 2e-11 Identities = 379/594 (64%), Gaps = 26/594 (4%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || |||||||| | | || || ||||| | | ||||||| || | || |||| || Sbjct 92766 ATCAGACCACAGATCTCGCAGACGTGGACTCGGAAAGCATCCGAGACCTCGAATAGACGC 92825 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | |||||||| | ||||||||| ||||| ||||| || |||||| Sbjct 92826 TCCTTCAGGAAAGAGGCGGCACCGTGAGCAATCATACAGTCACGTTCCATCTCTCCGAAA 92885 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 |||||||| ||||| | || | ||| || |||| || || || | | | ||| Sbjct 92886 CGAAGACCTCCATCTCTGGCACGACCTTCCACAGGTTGGCGCGTCATGATCTGGACTGGA 92945 Query 251587 CC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || | | ||||| || ||| || | |||||||| | |||||||||||| | Sbjct 92946 CCACGAGCTCGAGCG----TGGATCTTGTCGTCGACCATATGTCTCAGACGCTGGTAGTA 93001 Query 251643 TGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACA 251698 | ||| || | ||| | |||||| || || || ||| || | ||| |||| Sbjct 93002 GGTGGGTCCAAAGAACACCTGTGCTCGTAG----TTTCTTTCCTGTGTGGCCGTGGTACA 93057 Query 251699 TAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGC--AATATC--A 251754 | | ||| || ||| | ||| ||| | | | || | || ||| | Sbjct 93058 TGATCTCGAAGCCGCGAGACTGATATCCATGCTCACGGAG----AAGGCTTGATACCGAG 93113 Query 251755 CCAATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACT 251814 ||| | ||| | | |||| ||| | || || | | ||| | | || ||| Sbjct 93114 TCAACCGTGACATCGGTAAACGGCGTGGCATCGCCCTCCATTCCCTTGAGGGTCGCCACC 93173 Query 251815 TTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGA 251874 |||| | || ||| ||| || || || ||||| ||| || || || ||||| Sbjct 93174 TTGCTGAGCAGACACTCGATCAAATGAGCAATCGTCATTCGAGACGGGATGGCGTGGGGG 93233 Query 251875 TTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA 251934 |||||||||||||| || | || || ||||||||||| |||| || | ||| Sbjct 93234 TTGATGATGATGTCCGGGACGATACCCTCGCGGGTGAAGGGCATGTCCTCTT-GGCGATA 93292 Query 251935 -ATGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || || |||||||| |||||||| || ||| ||| ||||| || || Sbjct 93293 TGTGACACCGATGGTTCCCTTCTGTCCGTGGCGCGAAGCGAATTTATCTCCGAT 93346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800646960963