Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq21 152 6e-31 seq6 131 2e-24 seq80 109 7e-18 seq3 102 1e-15 seq8 87.8 2e-11 >seq21 Length=436828 Score = 152 bits (168), Expect = 6e-31 Identities = 130/159 (82%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| Sbjct 33046 AGGACAGCATCGGCGGCACGGTGACGTGCGTGGTCCGCAACGTGCCCAGCGGCCTGGGCG 33105 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 |||||||||| |||||| | |||||| ||| | |||||||||||| |||||||| | Sbjct 33106 AGCCGTGCTTCGACAAGCTGGAGGCCAAGCTGGGCCACGCCATGCTCAGCATCCCGGCGA 33165 Query 19165 CCAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202 | || || |||||||| || |||||| ||||||||| Sbjct 33166 CGAAAGGCTTCGAGATCGGGTCCGGGTTCGGCGGGTGCG 33204 Score = 149 bits (164), Expect = 8e-30 Identities = 275/394 (70%), Gaps = 16/394 (4%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCG-TCGGCTGCATCATCGACGGCGTGCCGCCGTG-CATGC 18157 |||||||| ||| | || || | || ||||| ||||||| ||||| | || |||| Sbjct 32424 GGCGAGTCCCACTGC-CGATCGGTGGGATGCATTGTCGACGG-GTGCCCTCCTGGCATGG 32481 Query 18158 CACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCAC 18217 ||| | || | ||||||||||| ||| || || || || ||||||||| |||| Sbjct 32482 AGCTGACGGAAGATGACATCCAGCCGCAGATGACGCGTCGACGGCCGGGCCAGAGCGCCA 32541 Query 18218 TTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCC 18277 | | ||||||||||||||| || ||||| || ||||| ||||| ||| |||| Sbjct 32542 TCACGACGCCGCGCAACGAGAAGGACCGCGTGGCGATACAGTCCGGCACCGAGTTCGGCG 32601 Query 18278 TCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT 18337 | || |||||| |||| ||||||| | || ||| |||||||| ||| |||| Sbjct 32602 TGACCCTCGGCACGCCGATCGGCCTGGTAGTCCTGAACGAGGACCAGCGACCCAAGGACT 32661 Query 18338 ATTCCG---ACATGTGCAA---GGTGCCGCGGCCCTCACACGCCGACTACACCTACATGG 18391 | || ||| | | | | ||||| || |||||||||| || ||| ||| Sbjct 32662 ACGGCGACAACACGATCGATCGCTTCCCGCGCCCGAGCCACGCCGACTGGACGTACCTGG 32721 Query 18392 CCAAGTACGGCATCAAGGCG-TCGTCG--GGCGGAGGCCGGTCGTCTGCCCGCGAGACCC 18448 ||||||||| |||||||| | || |||||| || | ||| |||||||||||| Sbjct 32722 AGAAGTACGGCGTCAAGGCGAGCAGCGGCGGCGGACGCAGCTCG---GCCCGCGAGACCA 32778 Query 18449 TCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 || || || ||||||||||| |||||||||| Sbjct 32779 TCGGACGAGTAGCCGCCGGCGCCATCGCCGAGAA 32812 >seq6 Length=656892 Score = 131 bits (144), Expect = 2e-24 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| | |||||||| ||||||||| | || || ||| |||| |||||| |||| |||||| Sbjct 301535 GCCTCGAACTACCTTGACATCAAGGCCCTCCTTGATGTTGGCTGCAAGACTGTTGCCAAC 301476 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 301475 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACATTCAACAT 301429 >seq80 Length=143956 Score = 109 bits (120), Expect = 7e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1574057 CCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGC 1574116 |||||| || || ||||||||| | | ||||||||||| || ||| || | || |||| Sbjct 7304 CCTGCCACCGGGCCGCCACAAGCTCGTGATCCTCGACGAAGCAGACAGCATGACATCGGG 7363 Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176 || ||||| ||||| || |||||||||| || |||||||||| || ||||| | Sbjct 7364 CGCACAGCAAGCCCTCCGACGAACCATGGAAATCTACTCCAACACGACACGATTTGCGTT 7423 Query 1574177 GGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 ||||||||| ||| | | |||||||| | || ||| || ||||| || ||||| Sbjct 7424 CGCGTGCAACCAGTCCAACAAGATCATCGAGCCGCTGCAATCGCGATGCGCGATCCTGCG 7483 >seq3 Length=1020397 Score = 102 bits (112), Expect = 1e-15 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| |||| ||||| Sbjct 108919 GCCTTTTGGTAGTCACCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 108860 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| |||||| | |||| ||| ||| || || | | Sbjct 108859 TTCTCCATGAAGTCGAAGGGGTTGCTGGAACGGTAGACCTTCTCGTTGCCAAGGGCGACC 108800 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | ||| ||||| ||||| |||||||||||||| ||| | | || ||||||||||| Sbjct 108799 AACAGACGGTCAGCGACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGA 108740 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || |||| | ||| ||| ||||| ||||| || | ||||| ||| |||| Sbjct 108739 AGGGCGCAGGGCAAAGCCTCAGTCAAGAACTCCTTCTCAATGACAACGGCATCGGTGATG 108680 Query 868931 ATCT 868934 |||| Sbjct 108679 ATCT 108676 >seq8 Length=601961 Score = 87.8 bits (96), Expect = 2e-11 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 1852133 TAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCG 1852192 ||||||| ||| |||| || ||||||| | || ||||||||||| ||| | || Sbjct 182332 TAGCCGATCTTCGGGAGGTTCTCCAGCGCAAACGTGAAAATCTTGCGCTGATCGAGACCA 182273 Query 1852193 CCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGC 1852252 || | || |||||||| ||||||| || ||| || || || |||||||| |||||| Sbjct 182272 CCGAGTTGCGCGTCGACATCGAGGTACTCCTCATCAAGAGCTTGCATGAGAGGGTAGGTA 182213 Query 1852253 ACGTTGCTCAGGAGCGGGTTGCGGTCCAT--CTTGACCACCTGAGCGGCGGCCTTTTGCG 1852310 | | |||| ||||| |||| | |||||| |||| |||| | |||||||| | Sbjct 182212 AGACCACCTAGGAACGGGT--CGGTGGTTTGCTTGACGACCTCAGCGCCAGCCTTTTGTG 182155 Query 1852311 C 1852311 | Sbjct 182154 C 182154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107065423849983