Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11]
899 sequences; 37,704,138 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq80 138 2e-26
seq3 136 6e-26
seq6 122 1e-21
seq133 107 3e-17
>seq80
Length=143956
Score = 138 bits (152), Expect = 2e-26
Identities = 178/246 (72%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253
|||||| || |||||||||||| | | |||||||| || || ||| || | || ||||
Sbjct 7304 CCTGCCACCGGGCCGCCACAAGCTCGTGATCCTCGACGAAGCAGACAGCATGACATCGGG 7363
Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313
|| ||||| ||||||||| |||||||||| ||| |||||||||| || |||||| |
Sbjct 7364 CGCACAGCAAGCCCTCCGACGAACCATGGAAATCTACTCCAACACGACACGATTTGCGTT 7423
Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373
|| |||||| ||| | | ||||||| | || || || ||||| ||| ||||
Sbjct 7424 CGCGTGCAACCAGTCCAACAAGATCATCGAGCCGCTGCAATCGCGATGCGCGATCCTGCG 7483
Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433
| | ||| ||||||||| | ||| | | | ||| ||| |||| ||||| || ||
Sbjct 7484 GTACGGGCGACTCACCGACTCGCAGGTGGTCAAGCGACTGATGCAGATCATCGAGGCGGA 7543
Query 2019434 AAAGGT 2019439
|||||
Sbjct 7544 GAAGGT 7549
>seq3
Length=1020397
Score = 136 bits (150), Expect = 6e-26
Identities = 232/333 (70%), Gaps = 15/333 (5%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | |||||| ||| || |||||||| || || |||||
Sbjct 108605 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATCAGACCACGCTT 108546
Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456
||| | ||| ||||| |||| || || | ||| ||||| ||||| ||||| ||
Sbjct 108545 CTTCAACCAGAAGATAGAGGCAAAGGCACCACT---GAAGAAGATACCCTCAACGGCAGC 108489
Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTT---GATCCACTTCAT 794513
||| | | ||| |||| ||||| || | | |||| || |||||| | |
Sbjct 108488 GAAGGCAATGAGTCGCTGAGCAAAGGTA-----GACTTCTT-GTCAGCGATCCATTGGAG 108435
Query 794514 CGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 794573
||||| || ||||| | | |||| | ||||| |||||| ||||| |||
Sbjct 108434 AGCCCAGTCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGATGGGT 108375
Query 794574 CTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633
||||| | | || ||||||| |||||| || ||||| || ||||| ||||| ||||||||
Sbjct 108374 CTTCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGAAGAGAGTACGTCTCGGAGTGGAT 108315
Query 794634 GTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| || || |||||||||||| || |||||
Sbjct 108314 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 108282
Score = 114 bits (126), Expect = 2e-19
Identities = 180/254 (71%), Gaps = 4/254 (2%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || || || || ||| |||||| |||||||||||||| |||
Sbjct 108927 TGACACCGGCCTTTTGGTAGTCACCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCACCGA 108868
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| |||||| | ||||| ||||||| || |
Sbjct 108867 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGCTGGAACGGTAGACCTTCTCGTTGCCAA 108808
Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068
| |||| ||| ||| ||||| |||||||| || |||||||| ||| | | || |||
Sbjct 108807 GGGCGAC-CAA-CAGACGGTCAGCGACGAACTCGATGTACTGCTTCATCAAGTTGGAGTT 108750
Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128
|||||||| || || ||||| | ||| | | ||||| ||||| || | |||||
Sbjct 108749 CATGCCGAGAAGGGCGCAGGGCAAAGCCTCAGTCAAGAACTCCTTCTCAATGACAACGGC 108690
Query 794129 CTCGATGATGATCT 794142
||| |||||||||
Sbjct 108689 ATCGGTGATGATCT 108676
>seq6
Length=656892
Score = 122 bits (134), Expect = 1e-21
Identities = 91/107 (85%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| | |||||||| ||||||||| ||||||| ||| | || |||||||| || ||||||
Sbjct 301535 GCCTCGAACTACCTTGACATCAAGGCCCTCCTTGATGTTGGCTGCAAGACTGTTGCCAAC 301476
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
| |||||||||||||| |||||||| ||||||||||| || |||||
Sbjct 301475 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACATTCAACAT 301429
>seq133
Length=62617
Score = 107 bits (118), Expect = 3e-17
Identities = 123/163 (75%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
|||||||||||| |||||||||||||| || ||||||||| ||||||| || ||| |||
Sbjct 48345 GTACTTGGTGACTGCCTTGGTACCCTCAGACACGGCGTGCTTGGCCAGCTCACCGGGCAG 48404
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590
|||||| || || | |||||| ||||| |||| ||| ||| |||||| || |
Sbjct 48405 GATCAGACGGACTGAGGTCTGTATCTCTCGGGAAGAGATGGTGGACTTCTTGTT-GTAGG 48463
Query 1485591 CGCCAGGC-GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632
|| || || | |||||||||| | | || |||| |||||
Sbjct 48464 CGGCAAGCTTGGAGGCCTCGGTGGCAACACGCTCGAAGATGTC 48506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916150769269661
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |