Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq80 138 2e-26 seq3 136 6e-26 seq6 122 1e-21 seq133 107 3e-17 >seq80 Length=143956 Score = 138 bits (152), Expect = 2e-26 Identities = 178/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253 |||||| || |||||||||||| | | |||||||| || || ||| || | || |||| Sbjct 7304 CCTGCCACCGGGCCGCCACAAGCTCGTGATCCTCGACGAAGCAGACAGCATGACATCGGG 7363 Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313 || ||||| ||||||||| |||||||||| ||| |||||||||| || |||||| | Sbjct 7364 CGCACAGCAAGCCCTCCGACGAACCATGGAAATCTACTCCAACACGACACGATTTGCGTT 7423 Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 || |||||| ||| | | ||||||| | || || || ||||| ||| |||| Sbjct 7424 CGCGTGCAACCAGTCCAACAAGATCATCGAGCCGCTGCAATCGCGATGCGCGATCCTGCG 7483 Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433 | | ||| ||||||||| | ||| | | | ||| ||| |||| ||||| || || Sbjct 7484 GTACGGGCGACTCACCGACTCGCAGGTGGTCAAGCGACTGATGCAGATCATCGAGGCGGA 7543 Query 2019434 AAAGGT 2019439 ||||| Sbjct 7544 GAAGGT 7549 >seq3 Length=1020397 Score = 136 bits (150), Expect = 6e-26 Identities = 232/333 (70%), Gaps = 15/333 (5%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| ||| || |||||||| || || ||||| Sbjct 108605 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATCAGACCACGCTT 108546 Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||| | ||| ||||| |||| || || | ||| ||||| ||||| ||||| || Sbjct 108545 CTTCAACCAGAAGATAGAGGCAAAGGCACCACT---GAAGAAGATACCCTCAACGGCAGC 108489 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTT---GATCCACTTCAT 794513 ||| | | ||| |||| ||||| || | | |||| || |||||| | | Sbjct 108488 GAAGGCAATGAGTCGCTGAGCAAAGGTA-----GACTTCTT-GTCAGCGATCCATTGGAG 108435 Query 794514 CGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 794573 ||||| || ||||| | | |||| | ||||| |||||| ||||| ||| Sbjct 108434 AGCCCAGTCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGATGGGT 108375 Query 794574 CTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633 ||||| | | || ||||||| |||||| || ||||| || ||||| ||||| |||||||| Sbjct 108374 CTTCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGAAGAGAGTACGTCTCGGAGTGGAT 108315 Query 794634 GTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| || || |||||||||||| || ||||| Sbjct 108314 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 108282 Score = 114 bits (126), Expect = 2e-19 Identities = 180/254 (71%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| |||||| |||||||||||||| ||| Sbjct 108927 TGACACCGGCCTTTTGGTAGTCACCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCACCGA 108868 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| |||||| | ||||| ||||||| || | Sbjct 108867 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGCTGGAACGGTAGACCTTCTCGTTGCCAA 108808 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | |||| ||| ||| ||||| |||||||| || |||||||| ||| | | || ||| Sbjct 108807 GGGCGAC-CAA-CAGACGGTCAGCGACGAACTCGATGTACTGCTTCATCAAGTTGGAGTT 108750 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||||| || || ||||| | ||| | | ||||| ||||| || | ||||| Sbjct 108749 CATGCCGAGAAGGGCGCAGGGCAAAGCCTCAGTCAAGAACTCCTTCTCAATGACAACGGC 108690 Query 794129 CTCGATGATGATCT 794142 ||| ||||||||| Sbjct 108689 ATCGGTGATGATCT 108676 >seq6 Length=656892 Score = 122 bits (134), Expect = 1e-21 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| | |||||||| ||||||||| ||||||| ||| | || |||||||| || |||||| Sbjct 301535 GCCTCGAACTACCTTGACATCAAGGCCCTCCTTGATGTTGGCTGCAAGACTGTTGCCAAC 301476 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 | |||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 301475 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACATTCAACAT 301429 >seq133 Length=62617 Score = 107 bits (118), Expect = 3e-17 Identities = 123/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| || ||||||||| ||||||| || ||| ||| Sbjct 48345 GTACTTGGTGACTGCCTTGGTACCCTCAGACACGGCGTGCTTGGCCAGCTCACCGGGCAG 48404 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||||| || || | |||||| ||||| |||| ||| ||| |||||| || | Sbjct 48405 GATCAGACGGACTGAGGTCTGTATCTCTCGGGAAGAGATGGTGGACTTCTTGTT-GTAGG 48463 Query 1485591 CGCCAGGC-GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 || || || | |||||||||| | | || |||| ||||| Sbjct 48464 CGGCAAGCTTGGAGGCCTCGGTGGCAACACGCTCGAAGATGTC 48506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916150769269661