Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-13 seq28 87.8 1e-11 >seq1 Length=1159409 Score = 93.3 bits (102), Expect = 3e-13 Identities = 116/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || ||||| || || | ||| || ||||| ||||| || | ||||| || ||||| Sbjct 1010901 TTGTCTAGACCGTAGGCGATAGCGGCGGCAGTAGGTTCGTTGACAATTCGCAGGACATTG 1010960 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||||||||| | || || || || ||||||||||| || ||||| || || || Sbjct 1010961 AGACCAGCAATGATGCCGGCGTCCTTGGTGGCTTGTCTCTGGTTGTCGTTGAAGTAGGCG 1011020 Query 282455 GGAACAGTAATAACGGCATCTGTTA-CTTCTTTTCCAA 282491 || ||||| | |||||| | || | |||||| |||| Sbjct 1011021 GGGACAGTGACAACGGCGTGGGTAACCTTCTTGCCCAA 1011058 >seq28 Length=396709 Score = 87.8 bits (96), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || || || ||||| | | || || ||||||||||||||||| ||| | ||||||||| Sbjct 197013 GGAAAGGAGGGTCGACTCCGTGGCAACTTGATGGGAAAGCGTGTTGATTTCTCTGCACGT 197072 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCT 432398 || |||||||| |||| |||| ||| | ||| | ||||| || |||||| Sbjct 197073 ACTGTTATTACGGGTGATGCTAACATTTCCCTCGACGAAGTGGGCGTTCCT 197123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740586262899174