Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq39 114 1e-20 >seq1 Length=1159409 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| ||| || || || |||||||| || ||| | | | ||||| |||||||| | Sbjct 850146 GGTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCA-TCCTCAAGCTGCTTAC 850204 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||| |||||||||||||| || |||||||| ||||| || Sbjct 850205 CAGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACT 850264 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||||| || ||| || || | |||| ||| ||||| || |||| Sbjct 850265 TGACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAG 850324 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 850325 TCTTGACGAAGATCTGCAT 850343 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| || |||||||| ||| | || || ||||| |||||||| || ||||||||||| Sbjct 849899 GTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTT 849958 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| | ||| || |||| ||| | Sbjct 849959 GTCCTGAATCTTTGACTTGACATTGTCGATTGTGTCGGACGACTCGACCTCGAGGGTAAT 850018 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGA 133650 ||| || ||||| || || || |||| Sbjct 850019 GGTCTTTCCGGTGAGGGTCTTGACGA 850044 >seq39 Length=338136 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | |||||||||||||| |||||||| |||||| Sbjct 214937 TCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 214996 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | || | ||||||| | |||||| || | ||||| Sbjct 214997 TCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATA 215056 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| || || || || ||||| ||||||||| Sbjct 215057 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 215092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415367558760