Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 165 1e-34 seq80 96.9 5e-14 seq21 91.5 2e-12 >seq3 Length=1020397 Score = 165 bits (182), Expect = 1e-34 Identities = 373/548 (68%), Gaps = 27/548 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||| |||||| ||||| ||||| ||||||||| | || | Sbjct 108068 GATCTGGCAGATGTAC-AAGAAGCACGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATC 108126 Query 1455835 TCGGCGCCGA----CACGGTCCACTGG-GTGTCGC--TGAGCGACGACGAGCGCCATTTC 1455887 || | || || | ||||| || | ||| ||| |||||| |||| Sbjct 108127 TCTCCAAGGATCTTCATG----ACTGGAGTAACCGATTGAACGATGACGAGAAGTTTTTC 108182 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||| ||||| || |||||| ||| |||||||| ||||||||| | Sbjct 108183 GTCTCCCACATCCTTGCCTTCTT-CGCCGCGTCCGACGGCATCGTCAACGAGAACCTTGT 108241 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | || || || | || ||||| || | || ||||| |||||||| Sbjct 108242 CGAGCGATTCAGCGGTGAAGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGAT 108301 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || || ||||| || || || || |||||| ||||||| Sbjct 108302 CATGATGGAGAACATCCACTCCGAGACGTACTCTCTTCTCATTGATACCTACATCAAGGA 108361 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || | | ||||| ||| ||||| |||||| ||||| | || | | | || Sbjct 108362 GCCCGCCCAGAAGACCCATCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAA 108421 Query 1456128 GGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 ||| |||||||| | | |||||| ||||| || || || |||||| |||| Sbjct 108422 GGCTGACTGGGCTCTCCAATGGATCGCTGACAAGAAG----TCTAC-CTTTGCTCAGCGA 108476 Query 1456185 CTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCGCCATCT 1456241 ||| | | ||| || | ||| ||||| ||||| ||| | | || || | | | |||| Sbjct 108477 CTCATTGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTTGC--CTCTATCT 108534 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGT 1456301 | ||| | |||||||| || || |||||||||||| ||| |||||| | ||| | Sbjct 108535 TCTGGTTGAAGAAGCGTGGTCTGATGCCCGGTCTT-ACCTTCTCCAACGAGCTCATCTCT 108593 Query 1456302 CGCGACGA 1456309 || ||||| Sbjct 108594 CGTGACGA 108601 Score = 102 bits (112), Expect = 1e-15 Identities = 184/264 (70%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| ||| ||||| | || ||||| ||||| | | ||| | |||| Sbjct 108673 AGAAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCTTGACTGAGGCTTTGCCCT 108732 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 || || ||||||||||| ||| | | ||| |||||||| || || ||||| || Sbjct 108733 GCGCCCTTCTCGGCATGAACTCCAACT-TGATGAAGCAGTACATCGAGTTC-GTCGCTGA 108790 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||| ||| | | || || ||| || ||||| |||||| | |||||| ||| | Sbjct 108791 CCGTCTGTTGGTCGCCCTTGGCAACG-AGAAGGTCTACCGTTCCAGCAACCCCTTCGACT 108849 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGT 1456756 |||||| ||||| |||| |||||||||||||| |||||| || || || || | Sbjct 108850 TCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGAGTCGGTGACT 108909 Query 1456757 ACGCCAAGGCCGGCGTCACCGCCA 1456780 || |||||||| |||| |||| Sbjct 108910 ACCAAAAGGCCGGTGTCATGGCCA 108933 >seq80 Length=143956 Score = 96.9 bits (106), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 332857 GTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCAT 332916 ||| ||||| ||| | | |||||||| || || || ||||| | |||||||| | | Sbjct 7502 GTCGGTGAGTCGCCCGTACCGCAGGATCGCGCATCGCGATTGCAGCGGCTCGATGATCTT 7443 Query 332917 TGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGA 332976 ||| |||||| || | ||||| || ||||| |||| | |||||||||| Sbjct 7442 GTTGGACTGGTTGCACGCGAACGCAAATCGTGTCGTGTTGGAGTAGATTTCCATGGTTCG 7383 Query 332977 CCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTT 333036 |||||||| || || || ||| || | || ||| || ||||||||||| | || ||| Sbjct 7382 TCGGAGGGCTTGCTGTGCGCCCGATGTCATGCTGTCTGCTTCGTCGAGGATCACGAGCTT 7323 Query 333037 GTGGCGCCCGTGCGGCAG 333054 |||||| || | ||||| Sbjct 7322 GTGGCGGCCCGGTGGCAG 7305 Score = 89.7 bits (98), Expect = 7e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 332515 GCCGCATCCCGTGTGCGTGGCATCAAGGTTGTTGATGGCCTGGCGCATGTCGCCGTCGGC 332574 |||| | |||| ||||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 7649 GCCGAAGCCCGCGTGCGTGCTCTGCAGGTTGTTGATGGCCTGGCGCATGTCGCCCTCGGC 7590 Query 332575 CGTGAGCACGATCGCTTCCAGGCCCTCGTCGGTGCAC 332611 ||| ||||| ||| ||| ||| |||||| || || Sbjct 7589 GCTGAACACGAGCGCCGCCACGCCGTCGTCGCTGTAC 7553 >seq21 Length=436828 Score = 91.5 bits (100), Expect = 2e-12 Identities = 193/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 |||||| | ||| |||||| || | ||||| |||||||| ||||| ||||| | Sbjct 5922 ATGTCGAACAAGTACTTCACCCATGCTTCCCCCACTCTCTTTAACGCCGGAACGCCACAA 5981 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 | ||| || || ||||| || | || ||||||| || || || || ||||| Sbjct 5982 GCACAGTTGTCTTCCTGCTTCCTCGTCGATATGAAGGATGACAGCATTGACGGTATCTAC 6041 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 || || |||||| || || | ||||||||| ||| || || || ||| | | Sbjct 6042 GATACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTCAACATC 6101 Query 260075 CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTT 260134 ||| | || || | ||| | || | || || |||||||| || ||||| || Sbjct 6102 CACCGTATCCGTGCTACCGGCTCTTATATCGCTGGAACCAACGGTACCTCGAACGGAATT 6161 Query 260135 GTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || ||||||||||| || || || |||| || | ||||| |||||| Sbjct 6162 GTACCCATGCTTCGTGTCTTCAATAACACTGCTAGATACGTTGACCAG 6209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177724489797638