Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq39 113 4e-20 seq1 107 2e-18 >seq39 Length=338136 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| |||| | |||||| | || || |||||||| || Sbjct 214895 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCG 214954 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || ||||| ||||||||||| | || | || |||||||||| ||||| ||| Sbjct 214955 GCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 215014 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | |||||| || |||||||| | ||||| || || ||||| | || Sbjct 215015 ACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 215074 Query 35720 TTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 215075 TTGACGAAGATCTGCAT 215091 >seq1 Length=1159409 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| ||| | ||||| |||| |||||||||||||||||||| Sbjct 849635 CTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTGCTTACCCGCAAA 849694 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||| ||||| | || | | ||||||||| |||||| ||| | || Sbjct 849695 GATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGACTT-AACGT 849753 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||| |||||||| | |||||||| ||||| || | || || | Sbjct 849754 TGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGTGAGGGTCTTGA 849813 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 849814 CGAAGATTTGCAT 849826 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || ||||||||||| ||||||||||| | || || || | || || ||||||||||| Sbjct 850147 GTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGCTTACCA 850206 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || ||||| ||||| ||||| | ||| | | |||||||||| ||||| ||| Sbjct 850207 GCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 850266 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | |||||| || || ||||| | ||||| || || || || | ||| Sbjct 850267 ACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTC 850326 Query 35720 TTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 850327 TTGACGAAGATCTGCAT 850343 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| |||| | |||||| |||| || || ||||| || || || Sbjct 849864 TCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAG 849923 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||| ||||| | |||| || ||||||||| |||||| ||| | | | Sbjct 849924 ATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGACTTGACATTG 849983 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | |||||| ||| || ||||| | || || || || || || Sbjct 849984 TCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTTCCGGT 850030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450788534206920