Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq21 174 2e-38 >seq21 Length=436828 Score = 174 bits (192), Expect = 2e-38 Identities = 589/909 (65%), Gaps = 10/909 (1%) Strand=Plus/Minus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||| | |||| || || || || || | |||||| | | ||||| || || || || Sbjct 6458 GTACAAAGCC--TCAAACTCGTCGCCGTAGACATCAGCTAGGCCAGGGCACTCGTTGGGG 6401 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624 |||||||| | |||| | | | | || || || ||||| || || ||||||||||| Sbjct 6400 CACATCAAAGTCCACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCCAG 6341 Query 69625 AGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCG 69684 ||||| | || ||||| | || | ||| || || || || || ||| ||| Sbjct 6340 AGAGCCAAGAAAAGATCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCG 6281 Query 69685 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGT 69744 || ||||| | | ||| || ||||| || || || || || || | | | || |||| Sbjct 6280 AGGAACTCGAAGACATCCGAGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGTCTC 6221 Query 69745 TTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804 || || || ||||| || | |||||| ||||||||||| |||| | ||||| || | | Sbjct 6220 TTGTTGCCACCCTGGTCAACGTATCTAGCAGTGTTATTGAAGACACGAAGCATGGGTACA 6161 Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864 || || || || |||| || ||||||| |||||| || | || || ||| Sbjct 6160 ATTCCGTTCGAGGTACCGTTGGTTCCAGCGATATAAGAGCCGGTAGCACGGATACGGTGG 6101 Query 69865 ATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCA 69924 || ||||| || || || ||||| || ||||| | ||||| || | || || Sbjct 6100 ATGTTGAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTATCG 6041 Query 69925 TATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 69984 || ||||| || ||||| ||||| |||| | | || || ||| ||||| || Sbjct 6040 TAGATACCGTCAATGCTGTCATCCTTCATATCGACGAGGAAGCAGGAAGACAACTGTGCT 5981 Query 69985 TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGC 70044 ||| ||||| || ||||| | || || || || || ||||| | || | || | | Sbjct 5980 TGTGGCGTTCCGGCGTTAAAGAGAGTGGGGGAAGCATGGGTGAAGTACTTGTTCGACATC 5921 Query 70045 AGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACG 70103 | ||||| |||| |||| | || | ||| ||| | || || | || ||||| Sbjct 5920 AAGTTGTAGGTTTGAATAACCTTCTCAACATCGTCACCCCAG-ATACCGACGGCAACACG 5862 Query 70104 CATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTT 70163 ||| | ||| ||||| |||| ||||| | || | || | || | || ||| ||| Sbjct 5861 CATGATCATGTGCTGCGGTCTCTCTACAATCTTCTCATCAAGCTTGAGCAAGTAAGATCG 5802 Query 70164 TTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATAACA 70221 |||| || || || ||||| || | ||| ||||| || || || || | ||| || Sbjct 5801 CTCCAAGGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCCCTGTCATAGACAATGGCA 5744 Query 70222 GAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGTAGGT-GAGATAATCGG 70280 || | | | ||||| | | | || | | | || | | || || || || Sbjct 5743 GAGTCAAAGTCTTCCTTGTGTCGCATGAC-ACACTCGTATGTATCCTTCGATATCATAGG 5685 Query 70281 AGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAA 70340 |||| || | || ||||| || ||||||| | ||| || || ||| | | Sbjct 5684 AGATGCCTTCCTGTTCTTAGGGTTGACATAGTGGTATAGGTCGCTGATAACAGAAGACCA 5625 Query 70341 TAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATA 70400 | | || || || | |||||||| || || | ||| || | |||||||| || ||||| Sbjct 5624 TTGCTTCTTGGTCTGCTTGTGTAGGTTGGACACGGCGATACGTGCTGCTAGGATGGCATA 5565 Query 70401 GTCAGGATG 70409 ||| || || Sbjct 5564 GTCTGGGTG 5556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901080862360