Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3 100 9e-16 >seq3 Length=1020397 Score = 100 bits (110), Expect = 9e-16 Identities = 346/528 (66%), Gaps = 19/528 (4%) Strand=Plus/Plus Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408 ||||||||||||||||||||||| | || |||| | ||| | | | |||| Sbjct 108114 GAGGAGATTGATCTCTCCAAGGATCTTCATGACTGGAGTAACCGATTG---AACGATGA- 108169 Query 443409 CGCGA----TTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGG 443464 || || |||| || |||| | |||||||| || || |||||| |||||| Sbjct 108170 CGAGAAGTTTTTCGTCTCCCACATCCTTGCCTTCTTCGCCGCGTCCGACGGCATCGTCAA 108229 Query 443465 TGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTA 443524 ||||| || || ||| ||| || || | | ||||||| || | |||||| Sbjct 108230 CGAGAACCTTGTCGAGCGATTCAGCGGTGAAGTTCAGATCCCCGAGGCTCGATGCTTCTA 108289 Query 443525 CGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGAC 443584 || ||||| | ||||||||||| ||| ||||| ||| || | || | || Sbjct 108290 CGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGTACTCTCTTCTCATTGATAC 108349 Query 443585 ACTAATTCCGAACGAAGACGAACAGCGGTCC-ATCTTCTCATCGTTCATGAC--CACGCC 443641 ||| || || || || ||| | || |||| ||| || |||| || || Sbjct 108350 -CTACATC--AAGGAGCCCGCCCAGAAGACCCATCTCTTCAACGCCATTGACACCATCCC 108406 Query 443642 AGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGA--ACGAGAAAATCTCAGC 443699 ||||| ||| || |||||| || ||| ||| || |||| ||| | | Sbjct 108407 CTGCATCCGCCGTAAGGCTGACTGGGCTCTCCAATGGATCGCTGACAAGAAG-TCT-ACC 108464 Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 || | ||||||| | || || |||| || || || | || || || || |||| Sbjct 108465 TTTGCTCAGCGACTCATTGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTT 108524 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 ||||| |||||||||||||| |||||||| || |||| |||||| ||||| ||||| Sbjct 108525 -GCCTCTATCTTCTGGTTGAAGAAGCGTGGTCTGATGCCCGGTCTTACCTTCTCCAACGA 108583 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 || ||| ||| ||||||||| | || ||||||||||| || || Sbjct 108584 GCTCATCTCTCGTGACGAGGGTCTCCACACTGACTTCGCCTGCCTGCT 108631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588317704851055