Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq36 183 9e-41 seq1 141 3e-28 seq83 111 5e-19 seq28 87.8 5e-12 >seq36 Length=342254 Score = 183 bits (202), Expect = 9e-41 Identities = 724/1136 (64%), Gaps = 5/1136 (0%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| | ||||| || || || || || || |||||||| | ||| | | | | || | Sbjct 300469 CCGCAGTCGGAATTGACTTGGGCACGACCTACTCTTGTGTCGGTGTCTTCCGAGACGACC 300528 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 || | || || ||||| ||||| ||||||||| |||| || || || | ||| || || | Sbjct 300529 GTATCGAGATCATTGCCAATGACCAAGGTAACCGAACCACACCTTCCTTCGTGGCCTTCA 300588 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 | || || ||||| |||| |||||| | || || || || | || || || | | Sbjct 300589 CGGACACGGAGCGATTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCAGA 300648 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAAT 349436 | || || || || || ||||| | ||||| ||| || | |||| || Sbjct 300649 ACACCGTCTTCGACGCCAAGCGTTTGATTGGACGAAAGTTCACCGACAGCGAGGTTCAGG 300708 Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTG 349496 |||| | || || || || || | || ||| || |||| || || || || | Sbjct 300709 CTGACATGAAGCACTTCCCCTTCAAGGTCGTTGACAAGAACGGC---AAGCCTATCATCG 300765 Query 349497 AGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTT 349556 |||| || || || ||||| || || || || ||||| || || || || ||||| Sbjct 300766 AGGTGGAGTACAAGGGTGAGCAGAAGCAGTTCACTCCCGAGGAGATCTCCTCTATGGTCC 300825 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | || ||| || | || || || || | |||| || || || | ||||| | Sbjct 300826 TCAACAAGATGCGTGAGACCGCCGAGGCGTACCTTGGTGGCACTGTCACCAACGCTGTCA 300885 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | ||||| || ||||| || || ||| | ||||| || || || || || || || Sbjct 300886 TCACTGTTCCCGCCTACTTCAACGATTCTCAGCGACAAGCTACTAAGGACGCCGGTCTCA 300945 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 | | || | || || || |||| || || || || || ||||| || || || || | Sbjct 300946 TCTCTGGCATGAACGTCCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATCGCCTACG 301005 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | ||||| || | | || || || |||| || || ||| | |||||||||| Sbjct 301006 GTCTTGACAAGAAGGCCGAGGGTGAGCGCAACGTTCTCATCTTCGATCTTGGTGGTGGTA 301065 Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856 | || ||||| || || | || |||| ||||| || || || ||||| | ||||||| Sbjct 301066 CCTTCGATGTCTCGCTCTTGACCATTGAGGAGGGTATCTTCGAGGTTAAGTCCACTGCTG 301125 Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAG 349916 |||| || || | ||||| || || || || || || || || || || || || | Sbjct 301126 GTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGACTTGTCAACCACTTCGTCAACG 301185 Query 349917 AATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTA 349975 | || ||||| ||||| || | ||| | || || | || | || || || Sbjct 301186 AGTTCAAGCG-CAAGCACAAGAAGGATCTCTCCACCAACGCTCGTGCTCTCCGACGTCTT 301244 Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAA 350035 | ||||| || || ||||| ||||| | | || || || |||| || || || || Sbjct 301245 CGCACTGCTTGCGAGCGTGCCAAGCGAACTCTGTCTTCGTCTGCCCAGACTTCGATCGAG 301304 Query 350036 ATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAA 350095 || || || || || || | || |||| | || || || |||||||| || || Sbjct 301305 ATCGACTCCCTGTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGATTCGAG 301364 Query 350096 GAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155 || | || |||||| || || | || || | || || || || | ||| Sbjct 301365 GAGCTCTGCCAGGATCTCTTCCGATCTACCATCCAGCCCGTCGACCGTGTCCTCGCCGAT 301424 Query 350156 GCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 || || || ||| ||| | | || | || | || ||||| || || ||||| Sbjct 301425 GCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTCGTCGGTGGCTCCACCCGTATC 301484 Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATT 350275 || ||||| || | | | || | || || || || || || | || || Sbjct 301485 CCCCGTGTTCAGAAGCTCATCACCGACTACTTCAACGGAAAGGAGCCCAACAAGTCCATC 301544 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331 || || || || |||||||| || ||||| || || ||||| |||| | ||||| Sbjct 301545 AACCCCGACGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCCGCTATCCTTTCTGG 301600 >seq1 Length=1159409 Score = 141 bits (156), Expect = 3e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| || |||||||| || || ||||| || | Sbjct 849820 TTTGCATACCACCACGGAGACGAAGGACAAGGTGGAGAGTAGATTCCTTCTGAATGTTGT 849879 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || |||| ||||| || || |||||||| || || || ||||| ||||| || || | Sbjct 849880 AGTCGGATAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGT 849939 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| ||||| || |||||||| || | || ||||| || || | || || | Sbjct 849940 CGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATTGTGTCGGACG 849999 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || |||| ||||||||||| || || || || Sbjct 850000 ACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGAC 850042 Score = 116 bits (128), Expect = 1e-20 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | || || || ||||| || || || || || || Sbjct 849372 CCACCACGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTC 849431 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| || | ||| || ||||| ||||| ||||||||||||||||| || Sbjct 849432 AGGGTGCGACCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGTGGG 849491 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| || || ||||| || || ||| || || || || |||| ||| || | |||||| Sbjct 849492 ATTCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATCGTATCCGAAGATTCAAC 849550 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| | ||| | ||||| || || | || || || || |||||||| Sbjct 849551 TTCCAATGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | || |||||||| || || |||||||| || ||||| || || || Sbjct 849596 CATACCACCACGAAGTCGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTC 849655 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | ||||| || || || || || || || |||||||| || || || || ||||| Sbjct 849656 GCTGAGAGTTCGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGGTCAGG 849715 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || | || || || || || | || || | || Sbjct 849716 CGGGATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGACGACTC 849775 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 849776 CACCTCGAGGGTGATCGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 849826 >seq83 Length=135873 Score = 111 bits (122), Expect = 5e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || ||||| ||||| || || || || || ||| Sbjct 25718 ATACCACCACGGAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 25659 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | ||||| || || || ||||| || || || ||||| ||||| || || || || Sbjct 25658 GAGAGCGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGG 25599 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 |||||||| || || |||||||| || | || ||||| || || | || || | || Sbjct 25598 GGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 25539 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || || || || | ||||| || || || || || || || Sbjct 25538 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 25498 >seq28 Length=396709 Score = 87.8 bits (96), Expect = 5e-12 Identities = 192/284 (68%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| || || || || ||||| || || || ||||||| || || || |||||| Sbjct 249338 GCTGTCATCACCGTCCCTGCCTACTTCAACGACAACCAGCGTCAAGCCACTAAGGATGCT 249397 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||| | || | || || || | || || || || |||||||| || || ||| Sbjct 249398 GGTGCCATCACTGGACTTAACGTCCTCCGTATCATCAACGAGCCCACTGCCGCCGCCATT 249457 Query 349730 GCATATGGGCTTGA--TAAAATGAGTGACCAAGaaaaa----aaTATTCTTATTTTTGAT 349783 || || || |||| | || ||| |||| || | || |||| || | ||| Sbjct 249458 GCTTACGG-CTTGGGTTCCAACAAGT--CCAACAAGGAGCGTAACGTTCTGATCTACGAT 249514 Query 349784 TTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTT 349843 | |||||||||||||| |||||||| || |||| | ||| || | || || Sbjct 249515 CTTGGTGGTGGTACTTTCGATGTATCCCTCCTAAACATCCAAGGTGGTGTCTTCACCGTC 249574 Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || || || |||||||| || ||||||||||| | ||||| || Sbjct 249575 AAGGCCACCGCTGGTGACACCCATCTTGGTGGTCAGGATTTCGA 249618 Score = 84.2 bits (92), Expect = 7e-11 Identities = 98/132 (74%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| |||| || ||| || || | | ||| | ||| ||||| || || Sbjct 199366 CGCGGAACACCAAGTGTCACGTTC---TTGGAAGAGATACCGGTAAAATGGAAGGTGTTG 199310 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| ||||| || || |||||||| || | ||| |||||||||||| Sbjct 199309 AGTGTCATCTGTGTAGCAGGCTCGCCGATAGACTGCGCAGCCAAAACACCAACCATTTCT 199250 Query 377578 CCAGGATTGACA 377589 ||||| |||||| Sbjct 199249 CCAGGGTTGACA 199238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515236946636897