Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq83 109 3e-19 seq1 100 2e-16 seq39 84.2 1e-11 >seq83 Length=135873 Score = 109 bits (120), Expect = 3e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||||||| |||||| || ||||| || || || || ||||| Sbjct 25706 AGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGG 25647 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || ||||| || || | ||||||||||||||| || | ||||||| Sbjct 25646 CCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCC 25587 Query 34609 TTGTC 34613 ||||| Sbjct 25586 TTGTC 25582 >seq1 Length=1159409 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| |||||||| || || || ||||| |||| || || || Sbjct 849624 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTGC 849683 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| ||||| || | ||||||||||| ||||| | |||||||||||| |||| || Sbjct 849684 TTACCCGCAAAGATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGGATC-TT 849742 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | |||||| | || ||||| |||||| || | ||| ||||| |||||||| Sbjct 849743 CGACTTAACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGT 849802 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || ||||| Sbjct 849803 GAGGGTCTTGACGAAGATTTGCAT 849826 Score = 95.1 bits (104), Expect = 8e-15 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| |||||||||||||| ||||| ||||| || || || || | || ||||| || Sbjct 850141 TGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCCTCAAGCTGC 850200 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||||| || || || || ||||||||||| || || | ||||||||||| Sbjct 850201 TTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTC 850250 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| ||||| |||||||| || || || || ||||| |||| |||||||| Sbjct 849852 TGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCCTCAAGTTGC 849911 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || ||||| || || | |||||||||||| || || | || |||||||| Sbjct 849912 TTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTC 849961 >seq39 Length=338136 Score = 84.2 bits (92), Expect = 1e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||||| | || | ||||| ||||||||||| || ||||| || || | Sbjct 214863 CGCCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGG 214922 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || ||||| | || || || || || ||||| || || || ||||| ||||| || | Sbjct 214923 AGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGG 214982 Query 34598 GCACTCCCTCCTTGTC 34613 | | ||||||||||| Sbjct 214983 GGATGCCCTCCTTGTC 214998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726151645467