Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 >seq1 Length=1159409 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || ||||| ||| | ||||| || || || || |||||||| | || || Sbjct 850042 GTCAAGACCCTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCGTCCGACACAATCGAC 849983 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| ||| ||||| ||||| |||||||| || ||||| ||||||||| | || Sbjct 849982 AATGTCAAGTCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGACCAACAGCGTCTGATC 849923 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||||||||| ||| | || ||| | ||| | ||||| ||||||||||| ||||| Sbjct 849922 TTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTATCCGACTACAACATTCAGAAGGAA 849863 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | || | || | ||| | || ||||| || Sbjct 849862 TCTACTCTCCACCTTGTCCTTCGTCTCCGTGGTGGTAT 849825 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | || |||||||| || || | ||| Sbjct 850343 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 850284 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| || || || || ||||| ||| Sbjct 850283 GACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAA 850224 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| || || || | || || | || | || ||||||||| Sbjct 850223 CAGCGATTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCGGATTACAAC 850164 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||| ||| | || | || | ||| | || |||||||| Sbjct 850163 ATCCAAAAGGAGAGCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGCAT 850114 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || || || ||||| |||| Sbjct 849826 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACGATCACCCTCGAGGTGGAGTCGTCG 849767 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || |||||||| || || || || || || ||| Sbjct 849766 GACACCATCGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAA 849707 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC--CGATTACA 27165 ||||| | || | || || || || |||| ||| | ||| | | || ||| |||| Sbjct 849706 CAGCGACTTATCTTTGCGGGTAAGCAGCTGGAGGACGGC-CGAAC-TCTCAGCGACTACA 849649 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| ||| | || | ||| | || | || ||||| || Sbjct 849648 ACATTCAGAAGGAGTCTACCCTCCACCTTGTTCTTCGACTTCGTGGTGGTAT 849597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913512604480