Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 163 7e-35 seq83 154 3e-32 seq39 143 6e-29 seq21 84.2 5e-11 >seq1 Length=1159409 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || ||| ||| ||||||||||| ||||||| || || | ||||| Sbjct 850132 AGGACAAGGTGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCGGCCATCC 850191 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || | || |||||||| ||||| | || ||||||||| Sbjct 850192 TCAAGCTGCTTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCC 850251 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || || ||||| ||| || ||||| |||||||| ||| Sbjct 850252 TGAATCTTGGACTTGACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 850311 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||||||||| || || | |||||| || Sbjct 850312 TTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTT 850346 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || |||||||| || || ||||| || || ||||| || || || || Sbjct 849605 ACGAAGTCGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTGAGAGT 849664 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || ||||||||||| || || |||||||| || ||||||||||| || | || Sbjct 849665 TCGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGGTCAGGCGGGATACC 849724 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| || ||||| ||||||||||| || || |||||||| Sbjct 849725 CTCCTTGTCTTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGACGACTCCACCTCGAG 849784 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || ||||| ||||| || || | ||||| Sbjct 849785 GGTGATCGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 849826 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| || || || || ||||| || || | ||||| | || || Sbjct 849843 AGGACAAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCC 849902 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || || |||||||| || |||| |||||||||||| Sbjct 849903 TCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCC 849962 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || || || ||||| ||||| || || |||||||| || || ||| Sbjct 849963 TGAATCTTTGACTTGACATTGTCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTC 850022 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 ||||| ||||| ||||| || Sbjct 850023 TTTCCGGTGAGGGTCTTGAC 850042 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || |||||||| || |||||||| || || ||||| | ||||| Sbjct 849387 AGGACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCC 849446 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || ||||||||||| ||||| || ||||| || | ||| ||||||||| Sbjct 849447 TCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 849506 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| || || || |||||| || | ||||||||| Sbjct 849507 TGGATCTTGCTCTTGACGTTGTCGATCGTATCCGAAGATTCAACTTCCAATGTGATCGTC 849566 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 849567 TTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 >seq83 Length=135873 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||||||||| || |||||||| || || | || || | || || Sbjct 25700 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCGGCCGTCC 25641 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || || |||||||| || |||| ||| ||||||||| Sbjct 25640 TCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCC 25581 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || || |||||||| ||||| ||| Sbjct 25580 TGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 25521 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || ||||| || || Sbjct 25520 TTGCCCGTCAGGGTCTTCACGAA 25498 >seq39 Length=338136 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||| ||| || |||||||| || || | ||||| | ||||| Sbjct 214880 AGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 214939 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || || ||||| || || | || ||||||||| Sbjct 214940 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 214999 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| || || ||||| || ||||| ||| Sbjct 215000 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 215059 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 215060 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 215091 >seq21 Length=436828 Score = 84.2 bits (92), Expect = 5e-11 Identities = 189/283 (67%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||||||||||||||| | |||| | ||| ||||| |||||||| Sbjct 6607 CCAAGGTTCTTTTGGTTGCTCTTACGGTTGCA---GTGATCCTTGTAAAGCATGAAGGGG 6551 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 |||| || | || ||| | |||||| || ||| |||| ||| || || || Sbjct 6550 TTTCCGGTTTCGGTCTGGGCCTCAAGAATGGCATACCACAGCTTCTGCGCCTTGATCTTC 6491 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | | |||||| ||| ||||||| ||| | |||| || || || ||| Sbjct 6490 TGGCGGCCGCGACCTTCAGCCTCATACTTTTCGTACAAAGCCTCAAACTCGTCGCCGTAG 6431 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 |||||| | || || || ||| |||||||| | | | |||||| |||| | || Sbjct 6430 ACATCAGCTAGGCCAGGGCACTCGTTGGGGCACATCAAAGTCCACTCGCCGTTCTTCTCG 6371 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 || || |||||||| ||||| | |||||| || |||||| Sbjct 6370 ACACGCTTCATGAAAAGGTCGGGAATCCAGAGAGCCAAGAAAA 6328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159138648380135