Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq39 127 5e-24 seq1 122 2e-22 seq83 120 7e-22 >seq39 Length=338136 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||| || ||||||||||| |||| | |||| ||||| Sbjct 214879 GAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATC 214938 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | ||||||||| | | ||| || ||||| || Sbjct 214939 CTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 214998 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || |||||| | || | |||| ||| ||| || ||||| || ||||| Sbjct 214999 CTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 215058 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| ||||||| |||||| Sbjct 215059 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 215091 >seq1 Length=1159409 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| || || || ||| ||||||||||||||||| | | ||| | Sbjct 850125 GAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGACAGAGTGCG 850184 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || ||||| || | | ||| ||||| | | ||| || || Sbjct 850185 GCCATCCTCAAGCTGCTTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTC 850244 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || |||||| | || | |||| || ||| || |||||||| Sbjct 850245 CTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCGGAGGACTCGACCTCAAGAGT 850304 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| ||||||||||| ||||||| |||||| || Sbjct 850305 GATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTT 850346 Score = 113 bits (124), Expect = 1e-19 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || |||||||| || || || |||||||| |||| || |||| || || Sbjct 849843 AGGACAAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCGTCC 849902 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||| ||||| | | || |||||||| || Sbjct 849903 TCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCCTTGTCC 849962 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| |||||| | || | |||| || ||| || || || ||||| || Sbjct 849963 TGAATCTTTGACTTGACATTGTCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTC 850022 Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094 || || ||||| ||||| |||| Sbjct 850023 TTTCCGGTGAGGGTCTTGACGA 850044 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || ||||| || ||||||||||| ||| | || | Sbjct 849380 GAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCG 849439 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || | || || ||||||||||| | ||||| || | | |||||| || Sbjct 849440 ACCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGTGGGATTCCCTC 849499 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | || ||| || ||||| | || Sbjct 849500 CTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTATCCGAAGATTCAACTTCCAATGT 849559 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| | ||||| ||||||| |||||| Sbjct 849560 GATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 849598 >seq83 Length=135873 Score = 120 bits (132), Expect = 7e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || ||||| ||||| || ||||||||||| || | | |||| Sbjct 25707 GAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTTCG 25648 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| || | ||| ||||||| | ||||| || Sbjct 25647 GCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATTCCCTC 25588 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || |||||| | || | | |||| ||| ||| || || || || Sbjct 25587 CTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGT 25528 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 || || |||||||| || |||||||||||| Sbjct 25527 GATGGTCTTGCCCGTCAGGGTCTTCACGAAG 25497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153807509787229