Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 145 2e-29 seq39 141 2e-28 seq83 140 8e-28 >seq1 Length=1159409 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || |||||||||||||||||||| || ||| Sbjct 849823 CAAATCTTCGTCAAGACCCTCACCGGTAAGACGATCACCCTCGAGGTGGAGTCGTCGGAC 849764 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| || ||||| || || ||||| || ||||| || Sbjct 849763 ACCATCGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAACAG 849704 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || ||||| || || || | ||||| ||| || ||| | Sbjct 849703 CGACTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGAACTCTCAGCGACTACAACATT 849644 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || || |||||| | |||| Sbjct 849643 CAGAAGGAGTCTACCCTCCACCTTGTTCTTCGACT 849609 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| ||||| || || ||||||||||| || || ||||| |||| Sbjct 850044 TCGTCAAGACCCTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCGTCCGACACAATCG 849985 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||||||||||||| ||||| || || || ||||| || || || | Sbjct 849984 ACAATGTCAAGTCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGACCAACAGCGTCTGA 849925 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||||||||| || || || || || || | || || |||| || ||| | || || | Sbjct 849924 TCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTATCCGACTACAACATTCAGAAGG 849865 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || || ||||| Sbjct 849864 AATCTACTCTCCACCTTGT 849846 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || ||||| || ||||| || ||| ||| Sbjct 850340 CAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGAC 850281 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || |||||||| ||||| || Sbjct 850280 ACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAACAG 850221 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| || || ||||| || ||||| | ||||| | ||||| ||| || Sbjct 850220 CGATTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCGGATTACAACATC 850161 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || ||||| Sbjct 850160 CAAAAGGAGAGCACCCTCCACCTTGT 850135 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || |||||||| | || || ||| || || Sbjct 849595 CAGATCTTCGTCAAGACCTTGACGGGCAAGACGATCACATTGGAAGTTGAATCTTCGGAT 849536 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || |||||||| || || |||||| Sbjct 849535 ACGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAGCAA 849476 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || || | || ||||| | || || ||| || ||| || Sbjct 849475 CGTCTTATCTTCGCTGGTAAGCAATTGGAGGATGGTCGCACCCTGAGCGACTACAACATC 849416 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 849415 CAGAAGGAGTCCACGCTCCA-CTTG 849392 >seq39 Length=338136 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 215088 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 215029 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 215028 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 214969 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 214968 CGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATC 214909 Query 178104 CAAAAAGA 178111 || || || Sbjct 214908 CAGAAGGA 214901 >seq83 Length=135873 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| || || || || || || ||||||||||||||||| || ||||||||| Sbjct 25498 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATC 25557 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| |||||||||||||| || ||||| || |||||||| || || || Sbjct 25558 GACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAACAGCGTCTG 25617 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 ||||||||||| || || ||||| || || | || || | || || ||| |||| || Sbjct 25618 ATCTTCGCCGGCAAGCAACTCGAGGACGGCCGAACGCTCTCTGACTACAACATCCAGAAG 25677 Query 178110 GAATCAACACTGCATCTTGT 178129 || || || || || || || Sbjct 25678 GAGTCCACTCTCCACCTGGT 25697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717334897406