Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq39 168 6e-37 seq83 156 4e-33 seq1 132 4e-26 >seq39 Length=338136 Score = 168 bits (186), Expect = 6e-37 Identities = 180/233 (77%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || ||||| | || || || || |||||||||||||| ||||| ||||||| Sbjct 214863 CGCCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGG 214922 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||| || | || |||||||||||||||||||| |||| ||||| ||||| | || Sbjct 214923 AGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGGG 214982 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACT 41810 | | || |||||||||| ||| | || | ||| || | || | ||||||| |||| Sbjct 214983 GGATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATAGTGTCGGAAGACT 215039 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 215040 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 215092 >seq83 Length=135873 Score = 156 bits (172), Expect = 4e-33 Identities = 170/221 (77%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| || || ||| ||||||||| ||||| ||||| ||| Sbjct 25715 CCACCACGGAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 25656 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||| |||||||||||||| ||||| ||||||||||||| |||| Sbjct 25655 AGCGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 25596 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | |||||||||| ||| | || | ||| || | || | |||||| |||||| Sbjct 25595 ATTCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCC 25539 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 ||||| | || || || || |||||||| ||||| ||||| Sbjct 25538 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 25498 >seq1 Length=1159409 Score = 132 bits (146), Expect = 4e-26 Identities = 164/220 (75%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || |||||||||||||| |||||||| Sbjct 849828 CCACCACGGAGACGAAGGACAAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAT 849887 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || |||||||||||||| ||||| ||||||||||| | |||| Sbjct 849888 AGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGA 849947 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| | |||| ||| || | || | |||||| |||||| Sbjct 849948 ATGCCTTCCTTGTCC-TGAATCTTTGACTTGACATTGTCG--ATTGTGTCGGACGACTCG 850004 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||||| | || || || || || || || ||||| |||| Sbjct 850005 ACCTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGACGA 850044 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||||||||||| || ||||| || || || Sbjct 850116 GCCACCACGGAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTTTGGATGTTGTAATCCGA 850175 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||| || ||||| |||| ||||||||||| | || Sbjct 850176 CAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAATCGCTGTTGGTCGGGAGG 850235 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || | | || | | | ||||||| ||||| | Sbjct 850236 GATACCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATAGTGTCGGAGGACTCGA 850294 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || || || || || || ||||| ||||| |||||||| || Sbjct 850295 CCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTT 850346 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| |||||| ||| || || |||| || |||||||| || || || Sbjct 849635 CTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCCAGCTGCTTACCCGCAAA 849694 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||||||||| | || | | ||||||||| ||| || ||| |||| Sbjct 849695 GATAAGTCGCTGTTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGACTT-AACGT 849753 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| |||||||||||| | || ||||| ||||| || || ||||| | Sbjct 849754 TGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTACCGGTGAGGGTCTTGA 849813 Query 41850 CGAAAATCTGCAT 41862 |||| || ||||| Sbjct 849814 CGAAGATTTGCAT 849826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462298804858800