Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq19 129 1e-24 seq35 89.7 1e-12 >seq19 Length=350955 Score = 129 bits (142), Expect = 1e-24 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGG 230473 |||||||| | || ||| | || ||| ||| | ||||||||||| | || ||| Sbjct 189938 AGGAGTTCCTGACGGAGGCTCTGCCCTGTGCCCTACTAGGCATGAACGCCAACCTCATGA 189997 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 ||||||||||| ||||| ||||||||| | | || || || || ||||||| |||| Sbjct 189998 AGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCCCTCGGCAACGAGAAGGTGT 190057 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 || ||| | |||||||| | || |||||| ||| || || || |||||||||| Sbjct 190058 ACCGCTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACT 190117 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||| ||||| || |||| || |||| | | ||||| ||| Sbjct 190118 TCTTCGAGAAGCGCGTTGGTGATTACCAGAAGGCCGGTGTCATG 190161 >seq35 Length=266941 Score = 89.7 bits (98), Expect = 1e-12 Identities = 202/299 (68%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 282507 TCGGTCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCG 282566 |||| ||||||||||| ||| ||||||| || || |||| | || |||| | Sbjct 180388 TCGGCCATGATCATCAAATGCCCGTATCGGAGGGATTTGTTGTCGGTATATACTTGTTTG 180329 Query 282567 GTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGATACTTGCC 282626 | ||||| | || ||| |||| ||||||| ||||| |||| || | | Sbjct 180328 TGCTTCAGGCCGAGAAATTGCTTGATATTCTGAATTTCTTGATTCTTCATGAT-CTGGTC 180270 Query 282627 -ACAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCTC 282685 | || |||||||||||||| |||| |||||| ||||| || || |||||| | || Sbjct 180269 GATTGAAGCATCGCGAACGTTGAGCATCTTACCTCGGAGGGGGAAGACACCAATGCGATC 180210 Query 282686 GCGACCGACCACGGACAGTCCTGCAATTGC--AAGTGTTGCTGCGGAATCTCCCTCCGTC 282743 | || | | | | | || |||| || || | ||| |||||||| || || ||| Sbjct 180209 GGGATCCAGAATAGCACGACCAGCAACAGCCAAACTCTTG--GCGGAATCACCTTCGGTC 180152 Query 282744 AAGATGAGAGTACACATCTTACTATGATTTGTGCCCGCCCATGCAGCATCGTTTAGTTT 282802 ||||| ||||| ||| | || ||| || ||||||||| | ||||||| ||||| Sbjct 180151 AAGATCAGAGTGCACTCATGACCATGCTTGGTGCCCGCCAAGTTAGCATCGACAAGTTT 180093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057817155548150