Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq19 116 4e-21
>seq19
Length=350955
Score = 116 bits (128), Expect = 4e-21
Identities = 384/591 (65%), Gaps = 12/591 (2%)
Strand=Plus/Minus
Query 16180 GTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGAT 16239
||| ||||| |||| || || ||||||||| || || || || || | |||
Sbjct 189879 GTTGAGGTGGGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGAT 189820
Query 16240 AAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGC 16299
||||||||||| || || | || ||||| || || ||||| | |||||| || |
Sbjct 189819 GAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGA 189760
Query 16300 AGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGC 16359
||| || | || ||||| ||||||||||||| || || || || | |||| ||
Sbjct 189759 AGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGC 189700
Query 16360 GTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACA 16419
| | || | | || | |||||| | | | |||| ||||| || | || ||
Sbjct 189699 GAAGGTGGACTTCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCA 189640
Query 16420 ATCCATCGTTTCTATGGCCTTAAACA-ATTTCTCTTTTTCCTGAATA---TCGATTATAT 16475
| || || || ||||| || || | || | |||| ||| | || | || |
Sbjct 189639 AGGAATGGTCTCAATGGCATTGAAGAGATGTGTCTT----CTGGGCAGGCTCCTTGATGT 189584
Query 16476 ACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATC 16535
| || ||||| || | ||| | || ||||| |||||||| || ||||| || |
Sbjct 189583 AGGTGTCAATGAGGAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGC 189524
Query 16536 CATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT 16595
| ||||||||||| ||||| | || || || || | | ||||| || | |||||||
Sbjct 189523 CGTAGAAGCATCGGGCCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCT 189464
Query 16596 CATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTT 16655
| || || || |||||| ||| || || || || | ||||| ||||| |||| |
Sbjct 189463 CGTTGACAATGCCGTCAGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAATTTCT 189404
Query 16656 CGTCA-GATGTAAGAATATG--CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTG 16712
||||| | || | || ||| || | | ||| ||||||| ||| | || || |
Sbjct 189403 CGTCATCGTTTAGGCGGTTGCTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGG 189344
Query 16713 GCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATAT-CATTG 16762
||||| ||| ||| | ||| || ||||| | ||| || | |||||
Sbjct 189343 CGGTCCAGAAGGAAGCTTCGTGCTTCTTGTACATCTGCCAGATCTGCATTG 189293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511411171696600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |