Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq19 116 4e-21 >seq19 Length=350955 Score = 116 bits (128), Expect = 4e-21 Identities = 384/591 (65%), Gaps = 12/591 (2%) Strand=Plus/Minus Query 16180 GTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGAT 16239 ||| ||||| |||| || || ||||||||| || || || || || | ||| Sbjct 189879 GTTGAGGTGGGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGAT 189820 Query 16240 AAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGC 16299 ||||||||||| || || | || ||||| || || ||||| | |||||| || | Sbjct 189819 GAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGA 189760 Query 16300 AGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGC 16359 ||| || | || ||||| ||||||||||||| || || || || | |||| || Sbjct 189759 AGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGC 189700 Query 16360 GTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACA 16419 | | || | | || | |||||| | | | |||| ||||| || | || || Sbjct 189699 GAAGGTGGACTTCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCA 189640 Query 16420 ATCCATCGTTTCTATGGCCTTAAACA-ATTTCTCTTTTTCCTGAATA---TCGATTATAT 16475 | || || || ||||| || || | || | |||| ||| | || | || | Sbjct 189639 AGGAATGGTCTCAATGGCATTGAAGAGATGTGTCTT----CTGGGCAGGCTCCTTGATGT 189584 Query 16476 ACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATC 16535 | || ||||| || | ||| | || ||||| |||||||| || ||||| || | Sbjct 189583 AGGTGTCAATGAGGAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGC 189524 Query 16536 CATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT 16595 | ||||||||||| ||||| | || || || || | | ||||| || | ||||||| Sbjct 189523 CGTAGAAGCATCGGGCCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCT 189464 Query 16596 CATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTT 16655 | || || || |||||| ||| || || || || | ||||| ||||| |||| | Sbjct 189463 CGTTGACAATGCCGTCAGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAATTTCT 189404 Query 16656 CGTCA-GATGTAAGAATATG--CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTG 16712 ||||| | || | || ||| || | | ||| ||||||| ||| | || || | Sbjct 189403 CGTCATCGTTTAGGCGGTTGCTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGG 189344 Query 16713 GCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATAT-CATTG 16762 ||||| ||| ||| | ||| || ||||| | ||| || | ||||| Sbjct 189343 CGGTCCAGAAGGAAGCTTCGTGCTTCTTGTACATCTGCCAGATCTGCATTG 189293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511411171696600